LOCUS       NM_001108669            1036 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus 3-hydroxyacyl-CoA dehydratase 4 (Hacd4), mRNA.
ACCESSION   NM_001108669 XM_001053522 XM_342860
VERSION     NM_001108669.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Ikeda M, Kanao Y, Yamanaka M, Sakuraba H, Mizutani Y, Igarashi Y
            and Kihara A.
  TITLE     Characterization of four mammalian 3-hydroxyacyl-CoA dehydratases
            involved in very long-chain fatty acid synthesis
  JOURNAL   FEBS Lett 582 (16), 2435-2440 (2008)
   PUBMED   18554506
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474094.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342860.3, XM_001053522.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ234476.1, SRR8487231.50658.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676807 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q32"
     gene            1..1036
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /note="3-hydroxyacyl-CoA dehydratase 4"
                     /db_xref="GeneID:362540"
                     /db_xref="RGD:1310339"
     exon            1..88
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..749
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /EC_number="4.2.1.134"
                     /note="protein tyrosine phosphatase-like protein PTPLAD2;
                     protein tyrosine phosphatase-like A domain containing 2"
                     /codon_start=1
                     /product="very-long-chain (3R)-3-hydroxyacyl-CoA
                     dehydratase 4"
                     /protein_id="NP_001102139.1"
                     /db_xref="GeneID:362540"
                     /db_xref="RGD:1310339"
                     /translation="MGPSVLPAWLQPRYRKSAYLFIYYLIQFCGHSWILTNMTVRFFS
                     FGKDSMVDTFYAIGLVMRVCQSISLLELLHIYIGIESNQLFPKFLQLTERIIILFGVI
                     TSQEEVQEKYVVCVLFIFWNLLDMVRYTYSMLSVIGTSYAVLTWLSQTLWMPIYPLCV
                     LAEAFTIYQSLPYFELFGKNSTMLPFDISTYFPYVLKLYLMMLFIGMYFTYSHLYTER
                     KDILRGSSVKQKKM"
     exon            89..192
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     exon            193..320
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     exon            321..433
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     exon            434..540
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     exon            541..666
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
     exon            667..1036
                     /gene="Hacd4"
                     /gene_synonym="Ptplad2; RGD1310339"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcccactcc tgctgtttct cggaggtgcc agagaagcag actgtggccc atggggccct
       61 cggtgctgcc agcctggctg cagcccaggt ataggaagag tgcgtatctt ttcatctatt
      121 acttaattca gttctgtggc cactcatgga tactgacaaa catgacagtc agattcttct
      181 catttgggaa agattcaatg gtcgacacgt tttacgctat tggtttggtt atgcgggttt
      241 gccaatccat ttccctcttg gagttactgc acatctatat tggcattgag tcaaatcagc
      301 ttttcccaaa gtttttgcag cttacagaga gaattatcat cctttttggg gtgatcacca
      361 gtcaagagga ggtccaagag aaatatgtag tgtgtgtttt attcatcttt tggaatctac
      421 tggatatggt aaggtacact tacagcatgc tgtcagtcat agggacatct tatgctgtct
      481 tgacatggct cagtcaaaca ctatggatgc caatttaccc tctgtgtgtt cttgctgaag
      541 cattcaccat ctatcagtca ctgccttact ttgagttatt tggcaaaaac tccaccatgc
      601 ttccgtttga tatatctacc tatttccctt acgtgctgaa gctatatctc atgatgctct
      661 tcataggtat gtattttacc tacagccatc tttatacgga aagaaaagac atcctccgag
      721 gatcttctgt caaacagaag aaaatgtgag acagcctgtt gcacagggga caagatgggc
      781 tgacggatta aactgtagcg aatacaacac tgggcctctg ctagagaaaa agaacataga
      841 actggactgg tctccaccat ggcgccatgt tccgaagcta ctgggctttg agaaaagaat
      901 tcccaacagg tgcagcgtac actgctttac cagggctgtg ggcgtcatac aagctacgtt
      961 tataatgagt cgactctgag tgtctccctg tgatgttagt gagaacagac tccatggagc
     1021 aaatccaatt gacttg
//
