LOCUS       NM_001079940            1451 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus hyaluronan binding protein 4 (Habp4), mRNA.
ACCESSION   NM_001079940 XM_001059348 XM_341479
VERSION     NM_001079940.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Saito,A., Souza,E.E., Costa,F.C., Meirelles,G.V., Goncalves,K.A.,
            Santos,M.T., Bressan,G.C., McComb,M.E., Costello,C.E., Whelan,S.A.
            and Kobarg,J.
  TITLE     Human Regulatory Protein Ki-1/57 Is a Target of SUMOylation and
            Affects PML Nuclear Body Formation
  JOURNAL   J Proteome Res 16 (9), 3147-3157 (2017)
   PUBMED   28695742
REFERENCE   2  (bases 1 to 1451)
  AUTHORS   Goncalves Kde,A., Bressan,G.C., Saito,A., Morello,L.G.,
            Zanchin,N.I. and Kobarg,J.
  TITLE     Evidence for the association of the human regulatory protein
            Ki-1/57 with the translational machinery
  JOURNAL   FEBS Lett 585 (16), 2556-2560 (2011)
   PUBMED   21771594
REFERENCE   3  (bases 1 to 1451)
  AUTHORS   Bressan,G.C., Quaresma,A.J., Moraes,E.C., Manfiolli,A.O.,
            Passos,D.O., Gomes,M.D. and Kobarg,J.
  TITLE     Functional association of human Ki-1/57 with pre-mRNA splicing
            events
  JOURNAL   FEBS J 276 (14), 3770-3783 (2009)
   PUBMED   19523114
REFERENCE   4  (bases 1 to 1451)
  AUTHORS   Passos,D.O., Bressan,G.C., Nery,F.C. and Kobarg,J.
  TITLE     Ki-1/57 interacts with PRMT1 and is a substrate for arginine
            methylation
  JOURNAL   FEBS J 273 (17), 3946-3961 (2006)
   PUBMED   16879614
REFERENCE   5  (bases 1 to 1451)
  AUTHORS   Kobarg,C.B., Kobarg,J., Crosara-Alberto,D.P., Theizen,T.H. and
            Franchini,K.G.
  TITLE     MEF2C DNA-binding activity is inhibited through its interaction
            with the regulatory protein Ki-1/57
  JOURNAL   FEBS Lett 579 (12), 2615-2622 (2005)
   PUBMED   15862299
REFERENCE   6  (bases 1 to 1451)
  AUTHORS   Huang,L., Grammatikakis,N., Yoneda,M., Banerjee,S.D. and Toole,B.P.
  TITLE     Molecular characterization of a novel intracellular
            hyaluronan-binding protein
  JOURNAL   J Biol Chem 275 (38), 29829-29839 (2000)
   PUBMED   10887182
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC129111.1.
            
            On or before Jan 11, 2007 this sequence version replaced
            XM_341479.3, XM_001059348.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129111.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1451
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /note="hyaluronan binding protein 4"
                     /db_xref="GeneID:361196"
                     /db_xref="RGD:1306486"
     exon            1..428
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1318
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /note="hyaluronic acid binding protein 4; ki-1/57
                     intracellular antigen"
                     /codon_start=1
                     /product="intracellular hyaluronan-binding protein 4"
                     /protein_id="NP_001073409.1"
                     /db_xref="GeneID:361196"
                     /db_xref="RGD:1306486"
                     /translation="MKGALGSPVAAAGAAMQETFGCVVANRFHQLLDDESDPFDILRE
                     AEHRRQQQLQRKRRDEAAAASGAGHRGGRSPAVASGHRPGAAGRRESQKERKSLAVSS
                     AQQPDSPGGPQPPGQKRTPRRGEQQGWNDNRGTDVVLDRAERRSYREYRPYDTERQAE
                     STAEKFTDEKPVDRFDRDRPLRGRGGPRGGLRNRGRGGPGNRAFDSFDQRGKRDFERY
                     GSSDKANRMEDSMGGCGVRTWGSGKDTSDTEPPAPMEETSMMEECQGVLDEESASKVP
                     ELEVEEENQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPSKAVVIHKSRYRDDIVK
                     DDYEDESHVFRKAANDITSQLEINFGNLPRPGRGARGSTRGGRGRIRRTENYGPRAEV
                     VTQDVAPNPDDPEDFPALA"
     exon            429..591
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            592..750
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            751..819
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            820..903
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1075
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            1076..1261
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1424
                     /gene="Habp4"
                     /gene_synonym="IHABP-4; IHABP4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcagcagc atgggtcctc gcccgcggct tcgctgaacc tcactggcct gggctgcccg
       61 cggcgcccgc agcggtggcg tcatgaaggg ggccctgggg agcccggtag ccgccgcggg
      121 cgccgcgatg caggagacgt tcggctgcgt cgtggccaac cgcttccatc agctgctgga
      181 cgacgagtcg gacccgttcg acatcctgcg ggaggccgag caccggcgcc agcagcagct
      241 gcagcgcaag cgtcgcgatg aggcggcggc ggccagcggg gctgggcacc gtggcggcag
      301 gagccctgcc gtggcctcag gacacaggcc cggcgcggcc ggccgcaggg agtcgcagaa
      361 ggagcgcaag agcctcgcgg tgtccagcgc acagcagcca gacagccccg ggggccctca
      421 gccgccaggc cagaagcgga ctcctagaag aggggagcag caaggatgga atgacaacag
      481 ggggacagac gtggtgcttg atagagcaga gcgaaggtcc tacagggaat accggcccta
      541 cgacactgag agacaggccg agtcgacagc ggagaagttt actgacgaaa aaccagttga
      601 caggtttgat cgagacagac cactgagagg acgtggaggc cccagaggag gcctgaggaa
      661 cagaggccga ggtggtcctg ggaacagagc ctttgactcc tttgaccaga gagggaaacg
      721 agattttgaa agatatggta gcagtgataa agcaaacaga atggaggaca gtatgggtgg
      781 ctgtggcgtt cgcacctggg gatcaggtaa agacactagt gacacagagc cacctgcacc
      841 catggaagag acctcgatga tggaggagtg ccagggcgtc ctggacgagg agtctgcatc
      901 caaagtccct gagttggagg tggaagagga aaatcaagtc caagagatga ccttagatga
      961 gtggaaaaac cttcaagaac aaaccagacc aaagcctgag ttcaatatcc ggaagccaga
     1021 gtccacagtt ccttccaagg cagtggtgat tcacaagtcc agatacagag atgatattgt
     1081 gaaggatgac tatgaggatg agtctcacgt cttccggaaa gctgccaatg atatcacctc
     1141 ccagctggag attaactttg gtaacctccc tcgccctgga cggggagcca gaggcagcac
     1201 ccggggaggc cgaggaagaa tcagaagaac ggagaactat ggcccccgag cagaagtggt
     1261 gacccaagat gttgctccca acccggatga ccctgaggac ttccccgccc tggcctaaca
     1321 gccactcccc tgcagcagag cagcactatg aagagacttt ccttgccgcg agaagagtca
     1381 gactctaaga acaatagatg ttgcttttcc cgtgtcgtgt gaaaaaaaaa aaaaaaaaaa
     1441 aaaaaaaaaa a
//
