LOCUS       NM_001408762             524 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus H3 clustered histone 1 (H3c1), mRNA.
ACCESSION   NM_001408762 XM_017600720
VERSION     NM_001408762.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Kato,D., Osakabe,A., Tachiwana,H., Tanaka,H. and Kurumizaka,H.
  TITLE     Human tNASP promotes in vitro nucleosome assembly with histone H3.3
  JOURNAL   Biochemistry 54 (5), 1171-1179 (2015)
   PUBMED   25615412
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 524)
  AUTHORS   Urahama,T., Horikoshi,N., Osakabe,A., Tachiwana,H. and
            Kurumizaka,H.
  TITLE     Structure of human nucleosome containing the testis-specific
            histone variant TSH2B
  JOURNAL   Acta Crystallogr F Struct Biol Commun 70 (Pt 4), 444-449 (2014)
   PUBMED   24699735
REFERENCE   4  (bases 1 to 524)
  AUTHORS   Todd,M.A. and Picketts,D.J.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   5  (bases 1 to 524)
  AUTHORS   Tachiwana,H., Osakabe,A., Shiga,T., Miya,Y., Kimura,H., Kagawa,W.
            and Kurumizaka,H.
  TITLE     Structures of human nucleosomes containing major histone H3
            variants
  JOURNAL   Acta Crystallogr D Biol Crystallogr 67 (Pt 6), 578-583 (2011)
   PUBMED   21636898
REFERENCE   6  (bases 1 to 524)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   7  (bases 1 to 524)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   8  (bases 1 to 524)
  AUTHORS   Dejardin,J. and Kingston,R.E.
  TITLE     Purification of proteins associated with specific genomic Loci
  JOURNAL   Cell 136 (1), 175-186 (2009)
   PUBMED   19135898
REFERENCE   9  (bases 1 to 524)
  AUTHORS   Hake,S.B., Garcia,B.A., Duncan,E.M., Kauer,M., Dellaire,G.,
            Shabanowitz,J., Bazett-Jones,D.P., Allis,C.D. and Hunt,D.F.
  TITLE     Expression patterns and post-translational modifications associated
            with mammalian histone H3 variants
  JOURNAL   J Biol Chem 281 (1), 559-568 (2006)
   PUBMED   16267050
REFERENCE   10 (bases 1 to 524)
  AUTHORS   Tagami,H., Ray-Gallet,D., Almouzni,G. and Nakatani,Y.
  TITLE     Histone H3.1 and H3.3 complexes mediate nucleosome assembly
            pathways dependent or independent of DNA synthesis
  JOURNAL   Cell 116 (1), 51-61 (2004)
   PUBMED   14718166
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jun 23, 2022 this sequence version replaced XM_017600720.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript is intronless :: CK596434.1, SRR22582424.1901865.1
                                        [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-524               JAXUCZ010000017.1  41796236-41796759
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..524
                     /gene="H3c1"
                     /gene_synonym="Hist1h3a"
                     /note="H3 clustered histone 1"
                     /db_xref="GeneID:679994"
                     /db_xref="RGD:1598076"
     exon            1..524
                     /gene="H3c1"
                     /gene_synonym="Hist1h3a"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..446
                     /gene="H3c1"
                     /gene_synonym="Hist1h3a"
                     /note="histone H3.1; histone cluster 1, H3a; histone
                     cluster 1 H3 family member A"
                     /codon_start=1
                     /product="histone cluster 3, H3"
                     /protein_id="NP_001395691.1"
                     /db_xref="GeneID:679994"
                     /db_xref="RGD:1598076"
                     /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRP
                     GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLV
                     GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
ORIGIN      
        1 atgctcaaaa atactcagtc tttacttgtc ttgcaatggc tcgtactaag cagaccgctc
       61 gcaagtccac cggcggcaag gctccgcgca agcagttggc caccaaagct gcccgcaaaa
      121 gcgccccggc caccggcggt gtgaagaagc cccaccgcta ccgtcccggc accgtggctc
      181 tgcgcgagat ccggcgctac cagaagtcca ccgagctgct gatccgcaag ctgccgttcc
      241 agcgcctggt gcgtgagatc gcgcaggact tcaagaccga cctgcgtttc cagagctcgg
      301 ctgtcatggc cctgcaggag gcttgtgagg cctaccttgt gggtctgttt gaggacacca
      361 atctgtgcgc catccacgcc aagcgtgtga ccatcatgcc caaggacatc cagctggccc
      421 gccgcatccg cggggagagg gcgtaattgt acagttcctg gcatgaacca aaggctcttt
      481 tcagagccac acacggtttc aagtaaaata gctgtgatat aaaa
//
