LOCUS       NM_001408643            3355 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus H2B clustered histone 9 (H2bc9), mRNA.
ACCESSION   NM_001408643 XM_006254120
VERSION     NM_001408643.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3355)
  AUTHORS   Zhang,Y., Mao,D., Roswit,W.T., Jin,X., Patel,A.C., Patel,D.A.,
            Agapov,E., Wang,Z., Tidwell,R.M., Atkinson,J.J., Huang,G.,
            McCarthy,R., Yu,J., Yun,N.E., Paessler,S., Lawson,T.G.,
            Omattage,N.S., Brett,T.J. and Holtzman,M.J.
  TITLE     PARP9-DTX3L ubiquitin ligase targets host histone H2BJ and viral 3C
            protease to enhance interferon signaling and control viral
            infection
  JOURNAL   Nat Immunol 16 (12), 1215-1227 (2015)
   PUBMED   26479788
REFERENCE   2  (bases 1 to 3355)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   3  (bases 1 to 3355)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   4  (bases 1 to 3355)
  AUTHORS   Bonenfant,D., Coulot,M., Towbin,H., Schindler,P. and van Oostrum,J.
  TITLE     Characterization of histone H2A and H2B variants and their
            post-translational modifications by mass spectrometry
  JOURNAL   Mol Cell Proteomics 5 (3), 541-552 (2006)
   PUBMED   16319397
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jun 21, 2022 this sequence version replaced XM_006254120.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1339719.1,
                                           SRR26643292.57803.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN06680412
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-404               JAXUCZ010000017.1  47173966-47174369   c
            405-3355            JAXUCZ010000017.1  47166372-47169322   c
FEATURES             Location/Qualifiers
     source          1..3355
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..3355
                     /gene="H2bc9"
                     /gene_synonym="Hist1h2bh"
                     /note="H2B clustered histone 9"
                     /db_xref="GeneID:100359692"
                     /db_xref="RGD:2325039"
     exon            1..404
                     /gene="H2bc9"
                     /gene_synonym="Hist1h2bh"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..471
                     /gene="H2bc9"
                     /gene_synonym="Hist1h2bh"
                     /note="histone H2B type 1; histone cluster 1 H2B family
                     member h; histone cluster 1, H2bh; histone cluster 1,
                     H2bc-like; histone H2B type 1-C/E/F/G/I"
                     /codon_start=1
                     /product="histone H2B"
                     /protein_id="NP_001395572.1"
                     /db_xref="GeneID:100359692"
                     /db_xref="RGD:2325039"
                     /translation="MPEPAKSVPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYK
                     VLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREVQTAVRLL
                     LPGELAKHAVSEGTKAVTKYTSSKLLQQHRNKSLCLSHRLPGHVI"
     exon            405..3355
                     /gene="H2bc9"
                     /gene_synonym="Hist1h2bh"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctagagttcc tgagctacag tctcaacatg ccggagcctg ccaagtctgt tcccgccccg
       61 aagaagggct ccaagaaggc cgtgaccaag gcgcagaaga aggacggcaa gaagcgcaag
      121 cgcagccgca aggagagcta ctcggtgtac gtgtacaagg tgcttaagca agtgcacccg
      181 gacacgggca tctcttccaa ggccatgggc atcatgaact cgttcgtgaa cgacatcttc
      241 gagcgcatcg cgggcgaggc gtcgcgcctg gcgcattaca acaagcgctc gaccatcacg
      301 tcccgggagg tccagacggc tgtgcgcctg ctgcttcccg gggagctggc caagcacgcg
      361 gtgtccgagg gcaccaaggc cgtcaccaag tacaccagct ccaagcttct gcagcaacac
      421 aggaataaga gtctctgtct cagtcatcgt cttcctggtc acgtaatcta agtgcaaagt
      481 tgaactgagc atgcaaactt cagagtttgt tgattcttcc tgaaaagatc gggatcatca
      541 atgctgggag aaaacagaca attcataact tttatttatg gcggctttcc tgactcaggc
      601 catgacaatg tcttacacca agagttatga cctcaagaca ccaggagaga gagaacattg
      661 gtggtactcg gatacgtctt gtactcagta gtcattgtgc tgcccctctc acttctactg
      721 ccacagtgga agctagctgt gaagtgctga gcccagggca gaagcaacag agtgtcacct
      781 gtaccagcac tagatgctca gagcacagca atggctagag ctgagctgct ccttttactg
      841 tgaaagaatg acagtgcgag gtgtaattat gtaaagaacc aaagcgtgac gatgacattg
      901 acaataagag taaaacatga aagaaatcca tcattggttt caaccactgc aagcacagta
      961 acatatttga ttttgaaaag atcctttgac acttgacatt cccatagtct ctttgtacag
     1021 aagaggattt atgaaggata tggagagcag tgaattaatt ccctaaagct acatggttac
     1081 agagtttctt atctttgtgt gtgtgttgct ggtggttttt tttatttttt attttttttt
     1141 tgagacatgt tctcatgtaa tctatgttgg cctctaacat gctaagtagc tgatgctagc
     1201 tttgagcttc ttcctcctga gtacttgggt tcgaggcatg tattaccctg actggctggt
     1261 agaaagattt taaagccatt taggtagttc caaactctgc atgttagccc cagtttcatg
     1321 ttatgcccaa ttgtatccaa caaccagaac ttttgcgggg gggctgaatt caattaaata
     1381 tgcagtacca tctggaggct gttttaataa gaagcaatat caaacatttg gacaaattgt
     1441 ttttggtaga cttagaacta tgtggggaca cacattctag ttctactaag acagcctctc
     1501 ttgctgtgcc agcagccctt ccaaaacagg ggcaatagtg ccaaatcttg taggaaataa
     1561 gcctttctgt ttttttgtct caaactcctg tatcatggca agtgccaggg ttgaagcagg
     1621 tgactggtga tttgtgcggt ggtcataatc ttagtctcaa agtggtattt ttttatttgt
     1681 cctataatat ttcatttaga acatacaaac acaataaaga aatattaata tgcacacatt
     1741 tgaagtgttt aacaaatcaa aaataaggct agaaaacaaa tgatgaactg gaaaatattt
     1801 ctattatgta aaactgaaat ggttttgcta ccagtctctt catcagtatt ccaagggcct
     1861 gaggatgtac ccaagttgca tcctgcttcc cgagtttaaa caaagcccta ggtttgatcc
     1921 cctgcatcca gacacaaacc aaggtggcac acatttgtaa ttccagcatt ggggaggtga
     1981 aggcatgaga accagtaaat catgggtaca tttccttact taacatttga tgctagcctt
     2041 ggctgtatga gctattctgt agtcagaaaa ggtggtaatc ccttttcccc cagctcatat
     2101 attataaggt caaaacaata aattttgtaa ctcttgagga aatggagact cctcaagtgt
     2161 gaagaatgct tcaaagcagg catcccttga tttcatcttt cgttactggg tttcaacatg
     2221 tggattgcaa cccctttggg agttaacagc cctttggtag gggtggtcta ttagacatac
     2281 tgcgtatcag atattaacat tgccactcat agcagtagca aaattacaaa gtacagtaaa
     2341 gataatttta tggttagagg tcatcacaac acaaggaact tagcattagt gtatggggaa
     2401 acaaaccgaa gccattttga ataaatcttc tgttttagac agggatcaaa taaaagttca
     2461 agttcccaca atctccctgg gtaactgaat cctggtgggc aagttgaaac ataaatgcta
     2521 gtcaagtctg ccccaccaaa gctgagtaaa ccaaccaggg caaacgggat aaacgaatca
     2581 caaagaaatg ttcccaggaa agtcccctat tcctgaatcc tgattggtga aaaaaatgta
     2641 gttgtaactt tgcacagata tttacagctt ttcaccacaa cattctgtga cattctggct
     2701 ccaggagtgg ggtcagaggc gggtgggagg tgtcttagtt cagctccaaa gtctgttctg
     2761 tggctctgat ccatcaatat tggcttgatt acaacaaacc tttcttttct gcattgacct
     2821 ggtatttgag ttgtgttgga ccaagtgaac cccataacat taggacagtt gagaaccgct
     2881 gtacaagttg ggattagaca gccttaagca cttccaagga ataaaatgta ctggatatca
     2941 tggccttgag aggactgagt tagccagagc caggctgact acatacaagc tgcaaacggg
     3001 cagtttggga gactagacct aagcttctgt tttccagaaa tgagaacctg gatctaggaa
     3061 cctgtggcca gccagccaca gccttgggca gttaatcctg aagcaagcat aggtagctag
     3121 aatgagtaag taactactct gggaagtctc cagagcctaa gcagttgtaa aatcagtcag
     3181 acccttagag acagagctga tggatcaagg taaatgggac atacatacaa ctcactggaa
     3241 ttcccataac tgacaataaa agctggacct gagagcctat caggggtctc tattctcaat
     3301 ggggagactc ttgcatgcag gaatttctgc tgaataaacg ctctttgtta ttgca
//
