LOCUS       NM_001315493             595 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus H2A clustered histone 18 (H2ac18), mRNA.
ACCESSION   NM_001315493 XM_001062079
VERSION     NM_001315493.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Khare,S.P., Sharma,A., Deodhar,K.K. and Gupta,S.
  TITLE     Overexpression of histone variant H2A.1 and cellular transformation
            are related in N-nitrosodiethylamine-induced sequential
            hepatocarcinogenesis
  JOURNAL   Exp Biol Med (Maywood) 236 (1), 30-35 (2011)
   PUBMED   21239733
REFERENCE   3  (bases 1 to 595)
  AUTHORS   Buschow,S.I., van Balkom,B.W., Aalberts,M., Heck,A.J., Wauben,M.
            and Stoorvogel,W.
  TITLE     MHC class II-associated proteins in B-cell exosomes and potential
            functional implications for exosome biogenesis
  JOURNAL   Immunol Cell Biol 88 (8), 851-856 (2010)
   PUBMED   20458337
REFERENCE   4  (bases 1 to 595)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   5  (bases 1 to 595)
  AUTHORS   Bonenfant,D., Coulot,M., Towbin,H., Schindler,P. and van Oostrum,J.
  TITLE     Characterization of histone H2A and H2B variants and their
            post-translational modifications by mass spectrometry
  JOURNAL   Mol Cell Proteomics 5 (3), 541-552 (2006)
   PUBMED   16319397
REFERENCE   6  (bases 1 to 595)
  AUTHORS   Boyne,M.T. 2nd, Pesavento,J.J., Mizzen,C.A. and Kelleher,N.L.
  TITLE     Precise characterization of human histones in the H2A gene family
            by top down mass spectrometry
  JOURNAL   J Proteome Res 5 (2), 248-253 (2006)
   PUBMED   16457589
REFERENCE   7  (bases 1 to 595)
  AUTHORS   Laine,B., Sautiere,P. and Biserte,G.
  TITLE     Primary structure and microheterogeneities of rat chloroleukemia
            histone H2A (histone ALK, IIbl or F2a2)
  JOURNAL   Biochemistry 15 (8), 1640-1645 (1976)
   PUBMED   1268188
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jun 29, 2022 this sequence version replaced NM_001315493.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: CB581786.1, BI285124.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-595               JAXUCZ010000002.1  186497271-186497865
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..595
                     /gene="H2ac18"
                     /gene_synonym="H2A.2; Hist2h2aa; Hist2h2aa1; Hist2h2aa3"
                     /note="H2A clustered histone 18"
                     /db_xref="GeneID:365877"
                     /db_xref="RGD:1307165"
     exon            1..595
                     /gene="H2ac18"
                     /gene_synonym="H2A.2; Hist2h2aa; Hist2h2aa1; Hist2h2aa3"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..436
                     /gene="H2ac18"
                     /gene_synonym="H2A.2; Hist2h2aa; Hist2h2aa1; Hist2h2aa3"
                     /note="histone cluster 2, H2aa; histone 2, H2aa; histone
                     cluster 2, H2aa1; histone cluster 2, H2aa3; histone
                     cluster 2 H2A family member A3"
                     /codon_start=1
                     /product="histone H2A type 1"
                     /protein_id="NP_001302422.1"
                     /db_xref="GeneID:365877"
                     /db_xref="RGD:1307165"
                     /translation="MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERV
                     GAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVT
                     IAQGGVLPNIQAVLLPKKTESHHKAKGK"
ORIGIN      
        1 acagtttcct ggttgtgacc gtccgtctgt ttgcgctctc gtgatgtccg gccgtggcaa
       61 gcaaggaggc aaggcccgcg ccaaggccaa gtcgcggtcg tcccgcgccg ggctgcagtt
      121 cccagtgggt cgcgtgcacc ggctgctgcg caagggcaac tacgcggagc gcgtgggcgc
      181 cggcgcgccg gtatacatgg cggcggtgct ggagtacctg accgccgaga tcctggagct
      241 ggcgggcaac gcggcccgcg acaacaagaa gacccgcatc atcccgcgcc acctgcagct
      301 ggccatccgc aacgacgaag aactcaacaa gctgctgggc aaagtgacga tcgcgcaggg
      361 cggcgtcctg cccaacatcc aggccgtgct gctgcccaag aagacggaga gccaccataa
      421 ggcgaagggc aagtgaggcg gctgctggca ccggcccgcg tctctacgaa cccttccccc
      481 ccccccagag aactctcaaa aaacggctct tttcagagcc acccacagaa tcagataaag
      541 agttgtgtca cggtaacccg tctcttggcc tttcccggcc cttccccaac agtaa
//
