LOCUS       NM_001109417            1031 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus H1.5 linker histone, cluster member (H1f5), mRNA.
ACCESSION   NM_001109417 XM_001057550
VERSION     NM_001109417.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Li,J.Y., Patterson,M., Mikkola,H.K., Lowry,W.E. and Kurdistani,S.K.
  TITLE     Dynamic distribution of linker histone H1.5 in cellular
            differentiation
  JOURNAL   PLoS Genet 8 (8), e1002879 (2012)
   PUBMED   22956909
REFERENCE   3  (bases 1 to 1031)
  AUTHORS   Bronze-da-Rocha,E., Lin,C.M., Shimura,T. and Aladjem,M.I.
  TITLE     Interactions of MCP1 with components of the replication machinery
            in mammalian cells
  JOURNAL   Int J Biol Sci 7 (2), 193-208 (2011)
   PUBMED   21383955
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1031)
  AUTHORS   Ninios,Y.P., Sekeri-Pataryas,K.E. and Sourlingas,T.G.
  TITLE     Histone H1 subtype preferences of DFF40 and possible nuclear
            localization of DFF40/45 in normal and trichostatin A-treated NB4
            leukemic cells
  JOURNAL   Apoptosis 15 (2), 128-138 (2010)
   PUBMED   19882353
REFERENCE   5  (bases 1 to 1031)
  AUTHORS   Th'ng,J.P., Sung,R., Ye,M. and Hendzel,M.J.
  TITLE     H1 family histones in the nucleus. Control of binding and
            localization by the C-terminal domain
  JOURNAL   J Biol Chem 280 (30), 27809-27814 (2005)
   PUBMED   15911621
REFERENCE   6  (bases 1 to 1031)
  AUTHORS   Roque,A., Orrego,M., Ponte,I. and Suau,P.
  TITLE     The preferential binding of histone H1 to DNA scaffold-associated
            regions is determined by its C-terminal domain
  JOURNAL   Nucleic Acids Res 32 (20), 6111-6119 (2004)
   PUBMED   15562002
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1031)
  AUTHORS   Lee,H., Habas,R. and Abate-Shen,C.
  TITLE     MSX1 cooperates with histone H1b for inhibition of transcription
            and myogenesis
  JOURNAL   Science 304 (5677), 1675-1678 (2004)
   PUBMED   15192231
REFERENCE   8  (bases 1 to 1031)
  AUTHORS   Kaludov,N.K., Pabon-Pena,L., Seavy,M., Robinson,G. and Hurt,M.M.
  TITLE     A mouse histone H1 variant, H1b, binds preferentially to a
            regulatory sequence within a mouse H3.2 replication-dependent
            histone gene
  JOURNAL   J Biol Chem 272 (24), 15120-15127 (1997)
   PUBMED   9182532
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Oct 3, 2022 this sequence version replaced NM_001109417.1.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR22582424.1415912.1,
                                        SRR21887622.543063.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1031              JAXUCZ010000017.1  47421875-47422905
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..1031
                     /gene="H1f5"
                     /gene_synonym="H1-5; Hist1h1b"
                     /note="H1.5 linker histone, cluster member"
                     /db_xref="GeneID:680522"
                     /db_xref="RGD:1590638"
     exon            1..1031
                     /gene="H1f5"
                     /gene_synonym="H1-5; Hist1h1b"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..726
                     /gene="H1f5"
                     /gene_synonym="H1-5; Hist1h1b"
                     /note="histone cluster 1, H1b; histone cluster 1 H1 family
                     member b"
                     /codon_start=1
                     /product="histone H1.5"
                     /protein_id="NP_001102887.1"
                     /db_xref="GeneID:680522"
                     /db_xref="RGD:1590638"
                     /translation="MSETAPAETTAPAPVEKSPAKKKTKKAGAAKRKATGPPVSELIT
                     KAVSASKERGGVSLPALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASG
                     SFKLNKKVASGEAKPKAKKTGAAKAKKPTGATPKKPKKTAGAKKTVKKTPKKAKKPAA
                     AGVKKVTKSPKKAKAAAKPKKATKSPARPKAVKSKASKPKVTKPKAAKPKAAKVKKAV
                     SKKK"
ORIGIN      
        1 attgcaaaat ttgctcttcg cgttaggttt ccttttcttg cagattttat tctcgccatg
       61 tctgaaactg ctcccgccga gactacggct cccgctcctg tagagaagtc tcccgccaag
      121 aagaagacaa aaaaagctgg cgcggcaaag cgcaaggcca ctggcccccc ggtatctgag
      181 ctcataacta aggctgtttc tgcctctaaa gagcgcggcg gcgtgtccct gcctgctctg
      241 aagaaggcat tggctgctgg tggctacgat gtggagaaga acaacagccg catcaagctt
      301 gggctcaaga gtttggtgag caaaggtacc ctggtgcaaa caaaaggtac tggcgcctct
      361 ggttccttca agcttaacaa aaaggtggct tccggcgaag ccaagcccaa ggctaagaag
      421 actggggctg ccaaggccaa gaaacctaca ggtgccaccc cgaagaagcc caagaagact
      481 gccggggcca agaagaccgt gaagaaaact ccaaagaaag caaagaagcc tgcagcggct
      541 ggagtaaaga aagttaccaa gagccctaag aaggccaagg ctgctgccaa gcctaaaaag
      601 gcgactaaga gcccggcaag gcccaaggcg gtgaaatcta aggcgtccaa gcctaaagtt
      661 accaagccca aggcagctaa gcctaaggct gccaaggtaa agaaggctgt ttccaagaag
      721 aagtaagctt gcttgtaaca gcagcaaagc cccaaaggct cttttcagag ccacccagag
      781 aactctgtga atgtagctgt acacacttta agctctcccg ggttgttatc tcccaattgg
      841 gccaaccaac tggaacacct tcccgccctg atttgggccc tgtgctcaat ctacaaggta
      901 agacggttta gtcttaccta tggataaatt ggttatgttg gctgttggta gtctcgcggc
      961 ccactatggt cacttgggac ctgtacgtgg gccataactg cccagtgtgg aataaaagcg
     1021 ttgttagtag c
//
