LOCUS       NM_133285                782 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus H1.4 linker histone, cluster member (H1f4), mRNA.
ACCESSION   NM_133285
VERSION     NM_133285.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Hayakawa,K., Ohgane,J., Tanaka,S., Yagi,S. and Shiota,K.
  TITLE     Oocyte-specific linker histone H1foo is an epigenomic modulator
            that decondenses chromatin and impairs pluripotency
  JOURNAL   Epigenetics 7 (9), 1029-1036 (2012)
   PUBMED   22868987
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 782)
  AUTHORS   Nishiyama,M., Skoultchi,A.I. and Nakayama,K.I.
  TITLE     Histone H1 recruitment by CHD8 is essential for suppression of the
            Wnt-beta-catenin signaling pathway
  JOURNAL   Mol Cell Biol 32 (2), 501-512 (2012)
   PUBMED   22083958
REFERENCE   4  (bases 1 to 782)
  AUTHORS   Zhang,Y., Liu,Z., Medrzycki,M., Cao,K. and Fan,Y.
  TITLE     Reduction of Hox gene expression by histone H1 depletion
  JOURNAL   PLoS One 7 (6), e38829 (2012)
   PUBMED   22701719
REFERENCE   5  (bases 1 to 782)
  AUTHORS   Mello,M.L., Alvarenga,E.M., Vidal Bde,C. and Di Donato,A.
  TITLE     Chromatin supraorganization, mitotic abnormalities and
            proliferation in cells with increased or down-regulated lox
            expression: Indirect evidence of a LOX-histone H1 interaction in
            vivo
  JOURNAL   Micron 42 (1), 8-16 (2011)
   PUBMED   20888776
  REMARK    GeneRIF: The data presented herein regarding chromatin remodeling
            indirectly support the hypothesis that LOX binds to histone H1 in
            vivo.
REFERENCE   6  (bases 1 to 782)
  AUTHORS   Tarkka,T., Oikarinen,J. and Grundstrom,T.
  TITLE     Nucleotide and calcium-induced conformational changes in histone H1
  JOURNAL   FEBS Lett 406 (1-2), 56-60 (1997)
   PUBMED   9109385
REFERENCE   7  (bases 1 to 782)
  AUTHORS   Walter,L., Klinga-Levan,K., Helou,K., Albig,W., Drabent,B.,
            Doenecke,D., Gunther,E. and Levan,G.
  TITLE     Chromosome mapping of rat histone genes H1fv, H1d, H1t, Th2a and
            Th2b
  JOURNAL   Cytogenet Cell Genet 75 (2-3), 136-139 (1996)
   PUBMED   9040779
REFERENCE   8  (bases 1 to 782)
  AUTHORS   Drabent,B., Kunz,C. and Doenecke,D.
  TITLE     A rat histone H2B pseudogene is closely associated with the histone
            H1d gene
  JOURNAL   Biochim Biophys Acta 1172 (1-2), 193-196 (1993)
   PUBMED   8439560
REFERENCE   9  (bases 1 to 782)
  AUTHORS   Kmera-Muszynska,M. and Kecik,T.
  TITLE     [Prognostic value of treatment trials used during the preoperative
            period in patients with primary retinal detachment]
  JOURNAL   Klin Oczna 94 (7-8), 190-191 (1992)
   PUBMED   1300396
REFERENCE   10 (bases 1 to 782)
  AUTHORS   Cole,K.D., Kandala,J.C., Kremer,E. and Kistler,W.S.
  TITLE     Isolation of a genomic clone encoding the rat histone variant, H1d
  JOURNAL   Gene 89 (2), 265-269 (1990)
   PUBMED   2373370
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Oct 25, 2022 this sequence version replaced NM_133285.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643286.43078.1,
                                        SRR26643288.57639.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-782               JAXUCZ010000017.1  41914425-41915206
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..782
                     /gene="H1f4"
                     /gene_synonym="H1-4; H14; H1d; Hist1h1c; Hist1h1d;
                     Hist1h1e"
                     /note="H1.4 linker histone, cluster member"
                     /db_xref="GeneID:201097"
                     /db_xref="RGD:2776"
     exon            1..782
                     /gene="H1f4"
                     /gene_synonym="H1-4; H14; H1d; Hist1h1c; Hist1h1d;
                     Hist1h1e"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..720
                     /gene="H1f4"
                     /gene_synonym="H1-4; H14; H1d; Hist1h1c; Hist1h1d;
                     Hist1h1e"
                     /note="histone H1.2; Histone 1d; H1 histone family, member
                     4; histone cluster 1, H1d; histone cluster 1 H1 family
                     member e; histone cluster 1, H1e"
                     /codon_start=1
                     /product="histone H1.4"
                     /protein_id="NP_579819.1"
                     /db_xref="GeneID:201097"
                     /db_xref="RGD:2776"
                     /translation="MSETAPAAPAAPAPAEKTPIKKKARKAAGGAKRKASGPPVSELI
                     TKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGAS
                     GSFKLNKKAASGEAKPKAKKAGAAKAKKPAGAAKKPKKATGTATPKKSTKKTPKKAKK
                     PAAAAGAKKAKSPKKAKATKAKKAPKSPAKARAVKPKAAKPKTSKPKAAKPKKTAAKK
                     K"
ORIGIN      
        1 gagtcccggc cagtgcctct gcttccggct cgagttctct cttcttacac acgcttcacc
       61 atgtctgaga ctgcccctgc tgcgcccgcc gcaccggccc ccgcagagaa gacacccata
      121 aagaagaagg cccgcaaggc cgcaggtggt gcgaagcgca aagcgtccgg acccccggtg
      181 tccgagctca tcaccaaggc tgtggccgcc tccaaggagc gcagcggcgt gtctctggcc
      241 gcgctcaaga aagcgctggc tgccgccggc tacgatgtgg aaaagaataa cagccgcatc
      301 aagctcgggc tgaagagcct ggtgagcaag ggcaccctgg tgcagaccaa gggcaccggc
      361 gcctccggct ccttcaaact caacaagaag gcggcttccg gcgaagccaa gcccaaagca
      421 aagaaggcag gcgcggctaa ggcgaagaag cctgcaggcg ctgccaagaa gcccaagaag
      481 gctacgggaa cagccactcc caagaagagc actaagaaga ctccaaagaa agcaaagaag
      541 ccggctgcag ctgcaggagc caaaaaagct aaaagcccga aaaaagcaaa agctactaag
      601 gctaagaagg cccccaagag ccctgccaag gcgagagcgg taaagcccaa agcggccaaa
      661 ccaaaaacct ccaagcctaa agcagctaag ccaaagaaaa cagcagccaa gaagaaataa
      721 aattttcttt ggccaactgc ttagaagccc aacaacccaa aggctctttt cagagccacc
      781 ca
//
