LOCUS       NM_001408767            1492 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus H1.2 linker histone, cluster member (H1f2), mRNA.
ACCESSION   NM_001408767 XM_003751694
VERSION     NM_001408767.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1492)
  AUTHORS   Todd,M.A. and Picketts,D.J.
  TITLE     PHF6 interacts with the nucleosome remodeling and deacetylation
            (NuRD) complex
  JOURNAL   J Proteome Res 11 (8), 4326-4337 (2012)
   PUBMED   22720776
REFERENCE   2  (bases 1 to 1492)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1492)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1492)
  AUTHORS   Nishiyama,M., Skoultchi,A.I. and Nakayama,K.I.
  TITLE     Histone H1 recruitment by CHD8 is essential for suppression of the
            Wnt-beta-catenin signaling pathway
  JOURNAL   Mol Cell Biol 32 (2), 501-512 (2012)
   PUBMED   22083958
REFERENCE   5  (bases 1 to 1492)
  AUTHORS   Zhang,Y., Liu,Z., Medrzycki,M., Cao,K. and Fan,Y.
  TITLE     Reduction of Hox gene expression by histone H1 depletion
  JOURNAL   PLoS One 7 (6), e38829 (2012)
   PUBMED   22701719
REFERENCE   6  (bases 1 to 1492)
  AUTHORS   Bronze-da-Rocha,E., Lin,C.M., Shimura,T. and Aladjem,M.I.
  TITLE     Interactions of MCP1 with components of the replication machinery
            in mammalian cells
  JOURNAL   Int J Biol Sci 7 (2), 193-208 (2011)
   PUBMED   21383955
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1492)
  AUTHORS   Davis,C.F. and Dorak,M.T.
  TITLE     An extensive analysis of the hereditary hemochromatosis gene HFE
            and neighboring histone genes: associations with childhood leukemia
  JOURNAL   Ann Hematol 89 (4), 375-384 (2010)
   PUBMED   19806355
REFERENCE   8  (bases 1 to 1492)
  AUTHORS   Th'ng,J.P., Sung,R., Ye,M. and Hendzel,M.J.
  TITLE     H1 family histones in the nucleus. Control of binding and
            localization by the C-terminal domain
  JOURNAL   J Biol Chem 280 (30), 27809-27814 (2005)
   PUBMED   15911621
REFERENCE   9  (bases 1 to 1492)
  AUTHORS   Roque,A., Orrego,M., Ponte,I. and Suau,P.
  TITLE     The preferential binding of histone H1 to DNA scaffold-associated
            regions is determined by its C-terminal domain
  JOURNAL   Nucleic Acids Res 32 (20), 6111-6119 (2004)
   PUBMED   15562002
  REMARK    Publication Status: Online-Only
REFERENCE   10 (bases 1 to 1492)
  AUTHORS   Fan,Y., Nikitina,T., Morin-Kensicki,E.M., Zhao,J., Magnuson,T.R.,
            Woodcock,C.L. and Skoultchi,A.I.
  TITLE     H1 linker histones are essential for mouse development and affect
            nucleosome spacing in vivo
  JOURNAL   Mol Cell Biol 23 (13), 4559-4572 (2003)
   PUBMED   12808097
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jun 24, 2022 this sequence version replaced XM_003751694.5.
            
            ##Evidence-Data-START##
            Transcript is intronless :: FQ232696.1, FQ231031.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1492              JAXUCZ010000017.1  41818962-41820453   c
FEATURES             Location/Qualifiers
     source          1..1492
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p11"
     gene            1..1492
                     /gene="H1f2"
                     /gene_synonym="Hist1h1c"
                     /note="H1.2 linker histone, cluster member"
                     /db_xref="GeneID:684681"
                     /db_xref="RGD:1587893"
     exon            1..1492
                     /gene="H1f2"
                     /gene_synonym="Hist1h1c"
                     /inference="alignment:Splign:2.1.0"
     CDS             43..681
                     /gene="H1f2"
                     /gene_synonym="Hist1h1c"
                     /note="histone cluster 1, H1c; histone H1.2; histone
                     cluster 1 H1 family member c"
                     /codon_start=1
                     /product="H1.2 linker histone, cluster member"
                     /protein_id="NP_001395696.1"
                     /db_xref="GeneID:684681"
                     /db_xref="RGD:1587893"
                     /translation="MSETAPAAPAAAPPAEKAPAKKKAAKKPAGMRRKASGPPVSELI
                     TKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGILVQTKGTGAS
                     GSFKLNKKAASGEAKPKAKKAAAAKAKKPAGAAKKPKKATGAATPKKAAKKTPKKAKK
                     PAAAAVTKKVAKSPKKAKVTKAKKVKSASKAVKPKAAKPKVAKAKKVAAKKK"
ORIGIN      
        1 accggcgtat tgccattagt tcctgacttc cagaggctca tcatgtcgga aactgctcct
       61 gctgcccctg ctgccgcgcc ccctgcggaa aaggcgccgg ccaagaagaa ggctgccaag
      121 aagcctgcag ggatgcgccg gaaggcgtcc ggacccccgg tgtccgagct catcactaag
      181 gccgtggctg cctccaagga gcgcagcggc gtgtccctgg ctgcgctcaa gaaggcgctg
      241 gcggcggccg gttacgatgt ggagaagaac aacagccgca tcaaactcgg gctgaagagc
      301 ctggtgagca agggcatcct ggtgcagacc aagggcaccg gcgcctccgg ctcttttaaa
      361 ctcaacaaga aggcagcttc tggcgaggcc aagcccaaag ctaagaaggc cgctgcggct
      421 aaggcgaaga agcctgcagg cgcagccaag aagcccaaga aagcgactgg tgctgccaca
      481 cccaaaaagg ctgccaagaa gacccctaag aaagccaaga agcctgccgc ggctgctgtg
      541 accaagaaag tagccaagag cccgaagaaa gccaaggtta ccaaggccaa gaaggtcaag
      601 agcgcgtcta aggcagtaaa gcctaaggct gccaagccca aggttgctaa ggccaagaag
      661 gttgcagcca agaagaagta agctgcctcc tttacaatcc aaaaggctct tttcagagcc
      721 accacatcca cttaagagct gtgacacttt gataattaac gaagcaggtc tgccttggac
      781 tccacccagg catcgctccg cgtgtttggt ggggttactt ttcccacttc gcgacgtttg
      841 ccctgggcag ctcagaagtg ttacgtgttg caccctcccc aaggctgtca acagcagaaa
      901 gcaacccctg gcgctagccc gtattggact gtaaggtgat ttgaaagttc cgcccttcca
      961 ctgtgttggc tcacttccac ctgggacttc attcagtttg gttgggcgtc attccgaact
     1021 ttgcgcttcc tgtggaaaaa cgcgttccgg acttaccctc tgggctcagc gtctcctgtg
     1081 ggtgttagcc ttgaagtgtg ggaggaagtc cgatgctggc gccaagacat atgagggggc
     1141 agctacctgg acgactgacc tcagttaagt ctgatctggg gctgaatgat tgtttcttgt
     1201 acttaacagt ttgtttgcta cagcgatgga gtgatggatt gaactgcgtc acaaccttgg
     1261 tcagccattt ttttttcttt ttaaagttta ttaccattac ggattacttg ttttgcctcc
     1321 tgttgactca agacaattgt agattaacat tgcctcagtt tcccgaaggg cttaaggtag
     1381 acgtatgtca tcactaaaga tcgacctcac ataaatactg aggttttttg gtaatgcttt
     1441 gttcagttaa tacattggct gtgtgcttat aataaaaaac ctttagtttt ta
//
