LOCUS       XM_039079355             794 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus gametocyte specific factor 1 (Gtsf1),
            transcript variant X3, mRNA.
ACCESSION   XM_039079355
VERSION     XM_039079355.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039079355.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..794
                     /gene="Gtsf1"
                     /note="gametocyte specific factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315347"
                     /db_xref="RGD:1310791"
     CDS             135..674
                     /gene="Gtsf1"
                     /codon_start=1
                     /product="gametocyte-specific factor 1 isoform X3"
                     /protein_id="XP_038935283.1"
                     /db_xref="GeneID:315347"
                     /db_xref="RGD:1310791"
                     /translation="MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDV
                     ANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPP
                     CDEDWDKDLWEQTSTPFVWGTASFCGNNRAGDRTQGLALPSPANNIVMEHKSNLASGM
                     RVPKSLPYVLPWKNNGNAQ"
ORIGIN      
        1 caatcacagg aagtgcggcc ccaccctggc atcaggccgg aagtgggcgt tgccggggcc
       61 tggctgtgag gcgaagtcgg cggtggggag agcttctgga ctgagcactt gaacaggact
      121 cctttgccat cagcatggaa gacacttaca tcgactccct ggaccctgaa aagttactac
      181 agtgccccta tgataaaaac caccagatca gggcctgcag gtttccttat catcttatca
      241 agtgcagaaa gaatcatcct gatgtcgcaa acaaattggc tacttgtccc ttcaatgctc
      301 ggcaccaggt tccccgggct gagatcagtc atcacatctc gagctgtgat gacaagagct
      361 gtattgagca ggatgtggtc aaccaaacca ggaaccttgg acaagagact ctggctgaga
      421 gcacatggca gtgccctcct tgtgatgaag actgggataa agacttgtgg gaacagacta
      481 gcaccccttt tgtctggggc acagccagtt tctgtggcaa caacagagct ggggaccgaa
      541 cccagggcct tgcgcttcct agtcctgcaa acaacatagt tatggaacat aagagtaacc
      601 ttgcttcagg catgcgagtt cccaagtctc tgccctatgt tctaccatgg aaaaacaatg
      661 gaaatgcaca gtaactgtga acatcttttt caaatgccag actgtggaag actcttgctt
      721 attcctgcta ccaagggttc ttcttttttc tctttatcta attatagaac agtaaactgt
      781 ctgtgacttt caaa
//
