LOCUS       NM_001079707             679 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus gametocyte specific factor 1 (Gtsf1), mRNA.
ACCESSION   NM_001079707 XM_001069132 XM_235708
VERSION     NM_001079707.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Yoshimura,T., Miyazaki,T., Toyoda,S., Miyazaki,S., Tashiro,F.,
            Yamato,E. and Miyazaki,J.
  TITLE     Gene expression pattern of Cue110: a member of the uncharacterized
            UPF0224 gene family preferentially expressed in germ cells
  JOURNAL   Gene Expr Patterns 8 (1), 27-35 (2007)
   PUBMED   17919994
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jun 29, 2015 this sequence version replaced NM_001079707.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK603932.1, SRR26360181.948333.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                JAXUCZ010000007.1  136435859-136435884 c
            27-71               JAXUCZ010000007.1  136434721-136434765 c
            72-172              JAXUCZ010000007.1  136431952-136432052 c
            173-299             JAXUCZ010000007.1  136426109-136426235 c
            300-383             JAXUCZ010000007.1  136425377-136425460 c
            384-447             JAXUCZ010000007.1  136424847-136424910 c
            448-542             JAXUCZ010000007.1  136422121-136422215 c
            543-578             JAXUCZ010000007.1  136419936-136419971 c
            579-679             JAXUCZ010000007.1  136417793-136417893 c
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..679
                     /gene="Gtsf1"
                     /note="gametocyte specific factor 1"
                     /db_xref="GeneID:315347"
                     /db_xref="RGD:1310791"
     exon            1..26
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            27..71
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..559
                     /gene="Gtsf1"
                     /codon_start=1
                     /product="gametocyte-specific factor 1"
                     /protein_id="NP_001073175.1"
                     /db_xref="GeneID:315347"
                     /db_xref="RGD:1310791"
                     /translation="MEDTYIDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDV
                     ANKLATCPFNARHQVPRAEISHHISSCDDKSCIEQDVVNQTRNLGQETLAESTWQCPP
                     CDEDWDKDLWEQTSTPFVWGTASFCGNNSPANNIVMEHKSNLASGMRVPKSLPYVLPW
                     KNNGNAQ"
     exon            72..172
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            173..299
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            300..383
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            384..447
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            448..542
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            543..578
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
     exon            579..679
                     /gene="Gtsf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attttcagaa gattcctgtg agagagcact tgaacaggac tcctttgcca tcagcatgga
       61 agacacttac atcgactccc tggaccctga aaagttacta cagtgcccct atgataaaaa
      121 ccaccagatc agggcctgca ggtttcctta tcatcttatc aagtgcagaa agaatcatcc
      181 tgatgtcgca aacaaattgg ctacttgtcc cttcaatgct cggcaccagg ttccccgggc
      241 tgagatcagt catcacatct cgagctgtga tgacaagagc tgtattgagc aggatgtggt
      301 caaccaaacc aggaaccttg gacaagagac tctggctgag agcacatggc agtgccctcc
      361 ttgtgatgaa gactgggata aagacttgtg ggaacagact agcacccctt ttgtctgggg
      421 cacagccagt ttctgtggca acaacagtcc tgcaaacaac atagttatgg aacataagag
      481 taaccttgct tcaggcatgc gagttcccaa gtctctgccc tatgttctac catggaaaaa
      541 caatggaaat gcacagtaac tgtgaacatc tttttcaaat gccagactgt ggaagactct
      601 tgcttattcc tgctaccaag ggttcttctt ttttctcttt atctaattat agaacagtaa
      661 actgtctgtg actttcaaa
//
