LOCUS       NM_001079941            2751 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus general transcription factor IIIC subunit 5
            (Gtf3c5), mRNA.
ACCESSION   NM_001079941 XM_001079142 XM_342399
VERSION     NM_001079941.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Vannini A.
  TITLE     A structural perspective on RNA polymerase I and RNA polymerase III
            transcription machineries
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 258-264 (2013)
   PUBMED   23031840
  REMARK    Review article
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Rajan S, Chu Pham Dang H, Djambazian H, Zuzan H, Fedyshyn Y, Ketela
            T, Moffat J, Hudson TJ and Sladek R.
  TITLE     Analysis of early C2C12 myogenesis identifies stably and
            differentially expressed transcriptional regulators whose
            knock-down inhibits myoblast differentiation
  JOURNAL   Physiol Genomics 44 (2), 183-197 (2012)
   PUBMED   22147266
REFERENCE   3  (bases 1 to 2751)
  AUTHORS   Dumay-Odelot H, Marck C, Durrieu-Gaillard S, Lefebvre O, Jourdain
            S, Prochazkova M, Pflieger A and Teichmann M.
  TITLE     Identification, molecular cloning, and characterization of the
            sixth subunit of human transcription factor TFIIIC
  JOURNAL   J Biol Chem 282 (23), 17179-17189 (2007)
   PUBMED   17409385
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC129109.1.
            
            On or before Jan 11, 2007 this sequence version replaced
            XM_342399.3, XM_001079142.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC129109.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2751
                     /gene="Gtf3c5"
                     /note="general transcription factor IIIC subunit 5"
                     /db_xref="GeneID:362095"
                     /db_xref="RGD:1305173"
     exon            1..400
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     CDS             248..1795
                     /gene="Gtf3c5"
                     /note="general transcription factor IIIC, polypeptide 5"
                     /codon_start=1
                     /product="general transcription factor 3C polypeptide 5"
                     /protein_id="NP_001073410.1"
                     /db_xref="GeneID:362095"
                     /db_xref="RGD:1305173"
                     /translation="MEAVESDADPKAAIPVDLRRERRLVCVEYPGVVQNEDKMLQTLG
                     GEEGVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRVRKRTRRRRGVPGDE
                     AHPHVTFDLEILGTISTIYKFQGMSDFQYLAVHTETDGTHVSMYDRVLMRKPEKEEFF
                     HQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGENLIGLSRARRPHNAIF
                     VNFEDTEVPEQPLEAAVQTWKKACTNPIDQKVEEELRKLFDIRPIWSRNAVKSNVSVH
                     PDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIRCGMKYGYGSR
                     DMPVKAKRSTYNYSLPITVKKTPSQPVTMHDLKQGLGPSGSDGPRKLTYNKYKLKDSV
                     YIFREGALPPYRQMFYQLCDLNVEELQKIVHRNDGTESVCTEKDGWCLPKTTDHLRDT
                     MSLMILQTIRSERPALFSNTGKADHGKEQLMFESGEEEEEEEEEEEFKPSDGSENEME
                     TEILDYV"
     exon            401..620
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            621..819
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            820..1015
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1120
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1235
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1316
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1414
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1497
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1640
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1820
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..2724
                     /gene="Gtf3c5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caccctcgtc tcgccccttt gtccaaccct cttcttttta aagtaaaaag cctctaggcc
       61 gctgtggggt cgcaaaatga acagatgcca tggcgccccg gttcctggag gcctttgagt
      121 ctccctgatt taaggagacg cgaaaggtaa agaggatcgg aacaattcct tcgcggaacc
      181 attgaggtga agcctagagg agccatttga gagcggacgg cggcgggccg ggaccggact
      241 ggtaggcatg gaggcggtgg agtcggatgc ggacccgaag gccgccatcc ctgtggacct
      301 gcggcgagaa cggcgactgg tgtgcgtgga gtacccgggc gtggtgcaaa acgaagataa
      361 gatgctacag actctgggcg gcgaggaagg cgtctctcga atctacactg accccaccaa
      421 gaggctggag ctctacttcc ggcccaagga cccatactgc catccagtgt gtgctaaccg
      481 cttcagtacc agtagcctgc tgctccgagt ccggaaaaga acaaggcgtc gcagaggtgt
      541 cccgggagac gaggcccacc cccacgtcac gttcgatctg gaaatccttg gcaccatctc
      601 cacaatttac aaattccagg gaatgtctga cttccagtac ttggcagtgc acacagagac
      661 tgacggcacg cacgtgtcca tgtacgacag agtgctcatg cgcaagcctg agaaggagga
      721 gttcttccat caggagctgc cactctacat ccccccgccc atcttctcca ggctggacac
      781 ccccgtggac tatttctatc gccctgagac acagcaccga gaaggctatc acaatccctc
      841 catctcagga gagaacctga ttggactgag tagagcccgg cgccctcaca atgccatctt
      901 tgtcaacttt gaggacactg aagtccctga acagccgttg gaggctgcag tgcagacgtg
      961 gaagaaagcc tgcaccaacc ccatcgatca gaaggtggag gaggagctga ggaagctctt
     1021 tgacatccgt cccatctggt cacgaaatgc tgtcaagtct aacgtcagtg tccatcctga
     1081 caagcttaag atcttgcttc cctatatggc ttattacatg ataacaggcc catggagaag
     1141 cttgtggatt cgatttggct atgaccctcg taagcaccca gatgccaaga tttatcaagt
     1201 ccttgacttt cgaatccgtt gtggaatgaa atatggatat ggctccaggg acatgcccgt
     1261 caaagcgaag cgcagcacat acaactacag cctccccatc accgtcaaga agacacccag
     1321 ccaacctgtc accatgcatg acctgaagca gggtctgggc ccatcaggaa gcgatggccc
     1381 acggaaactg acctacaata agtacaagct caaggattcg gtctacatct tccgggaagg
     1441 ggctctgcca ccctatcgac agatgttcta ccagctgtgt gatttgaatg tggaagagtt
     1501 acagaaaatt gttcaccgca atgatgggac agagagtgta tgcacagaga aagatgggtg
     1561 gtgcctcccc aagaccacag accacctgag agacactatg tcactcatga ttctacagac
     1621 catccgctct gagaggcctg ctctgttctc caacacaggt aaggctgatc atgggaaaga
     1681 gcagctgatg tttgaatctg gagaggagga ggaggaggag gaagaagagg aggagttcaa
     1741 gccctcagat gggagtgaga atgagatgga aacagagatt ctggattacg tgtgaggaag
     1801 cactgctccc gggtggccag gacatgctgg tatgccatgg tgggacagtt gggacaggct
     1861 tatgtcccat ccagagtggt gagatgagga cactaggcaa ccccaggctg tatgcagcct
     1921 gacttcacca aaggaccaac tcttcaattc cctgaaaaca ccctgtctca cagcttcctt
     1981 ttgtgcaacc agagactgtc aagtccctgc caagtgggcc tccatggaag gtcccctgtg
     2041 cataacctcc cccgggcagc agcaccactt cctgagggtg ctgagccaaa gatgggccat
     2101 tgccttgtct ctttgtggcc tcagtgcctt gaacagcctg gcacacacag tccagacaca
     2161 gccattcaca gccaaatgcc tcgagccagc ccatcctcct gacaagattg aagaccattg
     2221 tttgacttgg ctcaagtgat tccccagctc actggggatc ggccagccag acccgagtcc
     2281 ttgctgaccc tgcttcctgc tgcttcaaag aacactcagc ccaaaggcag gaaggagctc
     2341 ttccccaaag gctcgctagc cttgcctgtg cccagaggac ttctttcata gtggctgcca
     2401 ggacacttca gctgggggct ttcccactcc taatgactgc ccatccttgt ccttggggag
     2461 gagacctagg ttccgatccc atctacccag gaatactttg actctggatc tgaggagggt
     2521 gctgagggag ggaccctatg ccctctagag gcctcacctg cacagagccc agggcaatgg
     2581 ccgtcttgcc ttgggttggc cagactagaa ggacttcctg aagtctagcc acacttagta
     2641 aagtattgta attctcctga attcccatgt aaataaaagt gcttttagta aaaaaaaaat
     2701 aaaaataaaa ataaaccccc ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
