LOCUS       NM_001025120            3904 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus general transcription factor IIIC subunit 2
            (Gtf3c2), mRNA.
ACCESSION   NM_001025120
VERSION     NM_001025120.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Vannini,A.
  TITLE     A structural perspective on RNA polymerase I and RNA polymerase III
            transcription machineries
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 258-264 (2013)
   PUBMED   23031840
  REMARK    Review article
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Dumay-Odelot,H., Marck,C., Durrieu-Gaillard,S., Lefebvre,O.,
            Jourdain,S., Prochazkova,M., Pflieger,A. and Teichmann,M.
  TITLE     Identification, molecular cloning, and characterization of the
            sixth subunit of human transcription factor TFIIIC
  JOURNAL   J Biol Chem 282 (23), 17179-17189 (2007)
   PUBMED   17409385
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087088.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            37 bp suspected to be vector contamination from the 3' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087088.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132262, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3904              BC087088.1         1-3904
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..3904
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /note="general transcription factor IIIC subunit 2"
                     /db_xref="GeneID:313914"
                     /db_xref="RGD:1560392"
     exon            1..239
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            240..302
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            303..572
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     CDS             326..3181
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /note="general transcription factor IIIC, polypeptide 2,
                     beta 110kDa"
                     /codon_start=1
                     /product="general transcription factor 3C polypeptide 2"
                     /protein_id="NP_001020291.1"
                     /db_xref="GeneID:313914"
                     /db_xref="RGD:1560392"
                     /translation="MDTCGVGYVALGEADPVGSMIVVDSPGQEELNQLDVKASSETSS
                     VEASIEMSLPPPLPGFEDSSDKRRLPPDQESLTRLEQQDLSSEMAKVSNPRASKPSGR
                     RGGRTPRGAKRPQQRKPPSAPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGL
                     DQPESPHPKRPPEDFETPSGERPRRRAAQVVSLPNPGWPRTCDPPNSASRVLGLQACA
                     TTPGSPSHFSQTSPRALLYLQELAEELSTALPAPLSGPKSPKVSSPTKPKKTRQAASQ
                     GEEDGRARDEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPRGPAAGKQKPHCRGM
                     APNGLPNYIMAPVWKCLHLTKDLREQQHSFWEFAEWIPVAWKWQLLSELEAAPYLPQE
                     EKSPLFSVQREGIPEDGTIYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGSA
                     ASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPGNRAHFVYGIACDSG
                     CIWDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLAQQPPD
                     AMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWN
                     LPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANSHFLVSAGSDRKIKFWD
                     LRRPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASYGLCGIHYIDAGYLGFKAYF
                     TAPRKGTVWSLSGSDWLGTVAAGDISGELIAAILPDMASNPINVKKPAERRFPIYKAD
                     LIPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQDTDLSSFHNLLRREPML
                     RMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGLVRIHFVRGLTSPLA
                     HRVQLESRANFNAMFQPSFPTEGPGFSPSSHCLLPNP"
     exon            573..894
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1023
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1024..1300
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1395
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1396..1473
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1474..1572
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1800
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1801..1912
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1913..2021
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2022..2047
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2048..2177
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2178..2322
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2323..2484
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2485..2572
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2573..2701
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2702..2854
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2855..2962
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2963..3904
                     /gene="Gtf3c2"
                     /gene_synonym="TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaagccac gccacagctt gagggagtcg gagggctcag cgctacaccg cgccgcgctg
       61 cattatggaa cacagagttt aatagaaagc tcggcaggga acgcattcca gaccaagatt
      121 gcgtttacct tgtctcgggg gcggggcaag gaagagccga tcaagatttc gtcataaaac
      181 cgcgacccga caggcggcgc catcttcgaa cttggacttc cggaaggact ttggcgcgga
      241 tcctgtagtg tttgtgtttg ctgaaaactt tcttctgttt tctggaatag ttcttttgaa
      301 agggcagcca ttttgggggg tgctgatgga tacctgcggg gtcggctatg ttgccctggg
      361 ggaggccgac cccgtgggga gcatgattgt ggtagactct cctggacaag aagaactaaa
      421 ccagctggat gtcaaggcct cctcagaaac gtccagtgtg gaggcctcca tcgagatgtc
      481 actacctcct cctctgcctg gatttgagga ttcttctgac aagaggaggc ttcctccaga
      541 tcaggagagc ctcaccagat tggaacagca agatctttct tcagagatgg caaaggtctc
      601 aaaccctagg gcctcaaagc cttccgggag gagaggtggt aggacaccaa gaggcgctaa
      661 aaggcctcag caacgtaaac ctccatccgc ccctctggtt cctggtcttt tagatcagtc
      721 caaccctctg tccaccccca tgcctaagaa acgaagtcaa aagtccaagg gagacctgct
      781 actattgaag ttgtccaaag gcctagatca gccagagtct ccacatccaa agaggccccc
      841 cgaggacttt gagacccctt ctggggaacg accccgccga agggctgccc aagtggtgtc
      901 gctgcccaac ccaggttggc ctcgaacttg cgatcctccc aactcagcct cccgagtgct
      961 gggattgcag gcgtgcgcca ccacacctgg ctctccatca catttttcac agacttcccc
     1021 cagggcactt ctgtatcttc aggaactagc tgaagaactc tccacggccc tgcctgcacc
     1081 gctgtctggg cctaagagtc ccaaggtgag cagccccacg aagccgaaga agacccggca
     1141 agcagcctct cagggtgaag aagatggacg tgctcgggat gaagactttg ttctccaggt
     1201 cgagggtgag gatgaggaag agagtgaagc cccgagtgag aactcatctg atcctgagcc
     1261 tgtcgcaccc cgaagcaccc cacggggacc tgctgcaggg aaacagaaac cacactgccg
     1321 gggcatggct cccaatggct tacccaatta catcatggct cctgtttgga agtgcctcca
     1381 cctcaccaag gacctccgag agcagcagca ttcattctgg gagtttgctg agtggattcc
     1441 agtagcctgg aagtggcagt tgttatctga acttgaagcg gctccctacc tgccccagga
     1501 ggagaagtct cccctgtttt ctgtacagcg tgaagggatt cctgaggacg gcacaatcta
     1561 ccgaataaac agatttagct caatcacagc acatccagag cgctgggatg tgtccttctt
     1621 cacaggggga ccgctctggg ctctggactg gtgcccagtg cctgaagggt cagcagcctc
     1681 acagtatgtg gcccttttct ccagccctga catgaatgag acacacccac tgagccagct
     1741 tcattcaggc cctgggctgc tgcagctctg gggccttggg acattgcagc aagaaagctg
     1801 tcctggcaac agggcccact ttgtctatgg gattgcttgt gacagtggct gtatctggga
     1861 cctcaagttc tgccccagcg gggcatggga acatccagaa acccttcgga aggctcctct
     1921 cctgcctcgc ctgggtctct tggctctggc ctgctcagat gggaaggtac tgctgttcag
     1981 tctgccgcat cctgaggccc tcctggctca gcagccccca gatgctatga aacctgccat
     2041 ctacaaggtc cagtgtttgg caactcttca ggtggggtct gtacaagctt cagacccctc
     2101 tgagtgtggt cagtgcctta gcctggcttg gatgcctacc aggcctcacc accacctggc
     2161 tgctggatac tataatggca tggtagtttt ctggaatctt cccactaact cgcccctcca
     2221 aaggatacga ctctctgatg gctccttaaa gctgtacccc ttccagtgtt tcctagccca
     2281 tgaccaggct gttcgtacaa ttcagtggtg caaagctaac agtcatttcc tggtgtctgc
     2341 agggagtgac cggaaaatca agttctggga tcttcgacga ccttatgaac caataaattg
     2401 tatcaagcgc ttcttgagta cagagctttc ctggctgctc ccctacaatg gtgtcacagt
     2461 ggctcaagac aactgttatg cctcttacgg gctctgtgga attcattaca ttgatgcggg
     2521 ttaccttggt tttaaggcct actttactgc tccacggaaa ggcactgtct ggagtctttc
     2581 aggttcagac tggcttggga cagtagctgc aggagatata tccggggagc tcattgcagc
     2641 tattttacct gacatggcgt caaacccaat caatgtcaag aaacctgcag aaagaagatt
     2701 tcctatatat aaagcagatc tgataccata ccaggacagc cctgaagacc aagactactc
     2761 ctcgacctcc tctgagaccc ccaaccctcc caaggcgagg acctacactg agaccatcaa
     2821 ccaccactac ctgctctttc aagacacaga tctgagctcc ttccacaatc tgcttcgtag
     2881 agaaccgatg cttcgcatgc aggaaggaga agggcattct cagctttgcc tggacaggct
     2941 gcaacttgaa gctattcaca aggtacgttt cagcccaaac ctggactcct atggatggct
     3001 ggtatctggg gggcagtcag ggctggttcg gatccatttt gtccgtggac tcacctcccc
     3061 gctggcccac cgtgtacagc ttgaaagccg agccaacttc aatgctatgt tccaaccatc
     3121 ctttccaact gaagggcctg gtttctctcc aagcagccat tgccttctcc ctaatcccta
     3181 gtctggtcca cacaaactct tggattgaag tctgccaaga acaaatggcc cctatgcaca
     3241 gagcatagga cctgggccct tcctggacag tgatggtgcc aggcctacat cttgaggcct
     3301 acatgcccca aactccttaa atccctctcc ttctacagac ttctatggtt atagctccct
     3361 gcaggtaggg gggctccccc tccacaacaa ttcctatgcc taaaaccgtg gctcacaaga
     3421 aacactcagg ccaaacctag gcttgggagt caaattgctc atattgagca tatgtgaagg
     3481 aggtaaagct aagtaaaggc actgggtgtt tttgagagca cttgtgagtg ggtatttgga
     3541 gagtcggaaa ggacatcttc atgaaggctc ctgtctattt ccaggatttg atgttattgc
     3601 cttccaatct tcctctttag aataaccaac acacaggccc agtggtgggg acagtaattt
     3661 attggactga agctgctcgt aacttaactg taaccgagga gaccataagc acctgccagt
     3721 aggacagcag ctagctctta acttgttccc aatcactgac atgggacact acttgaacac
     3781 tcctagatag tgtttttaaa attcttgaag ctgggtatag tggtgcatac ctgtaatccc
     3841 ggctcgtggg aggccaagac aggaggatca caagtttgcg ttcagtctgg gctatctcat
     3901 aaaa
//
