LOCUS       XM_039089093            4160 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GTF2I repeat domain containing 1
            (Gtf2ird1), transcript variant X21, mRNA.
ACCESSION   XM_039089093
VERSION     XM_039089093.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089093.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4160
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /note="GTF2I repeat domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 6 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
     CDS             137..3043
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X18"
                     /protein_id="XP_038945021.1"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
                     /translation="MGRATVVPLPYERLLREPGLLAVQGLPEGLAFRRPAEYDPKALM
                     AILEHSHRIRFKLRRPPDDGGQDTKALVEMNGISLLPKGSRDCGLHGQASKVSPQDLT
                     PTATPSSMANFLYSTSMPNHTIRELKQEVPTCPLTPSDLGLGWPVPEPHVPSTQDFSD
                     CCGQAPAGPAGPLIQNVHASKRILFSIVHDKSEKWDPFIKEMEDINTLRECVQILFNS
                     RYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIPFKRPCTYGVPKLKRILEERHSI
                     HFIIKRMFDERIFTGNKFTKDPMKLEPASPPEDTATEVCRDSMLDLAGTAWSDMSSVS
                     EDCGPGTSGEIGMLRPIKIEPEELDIIQVTVSDPSPTSEEMTDSLPGHLPSEDSGYGM
                     EMPADKGPSEEPWQEERPAEESPGDVIRPLRKQVEMLFNTKYAKAIGTSEPVKVPYSK
                     FLMHPEELFVLGLPEGISLRRPNCFGIAKLRKILEASNSIQFVIKRPELLTDGVKEPV
                     MDTQERDSWDPLVDETPKRQGLQESSRIQENYNTRLSRIDIANTLREQVQDLFNKKYG
                     EALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFT
                     VTRPFQGLIPKPETKILTTGHEAGKTTRPRRPQQDSWQPDEDDANRLGEKVILREQVK
                     ELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILK
                     ARDHVRMVIINQLQPFTEVCNDPKVPDEDDSNKLGKKVILREQVKELFNEKYGEALGL
                     NRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKARDHVRMVIINQL
                     QPFGDVCNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSSNPESVASTNQISLV
                     VKSRGSELHPNSVWPLPLPRAGPSTAPGTGRHWALRGTQPTREVQAHPLVLPTR"
ORIGIN      
        1 ggggacccct gtggaacgat ccagaagcag gacaccctaa aaaggtgcag cgctgcgaag
       61 gtggtggccg gagcatcccg cggtcctctc tggagcagtg ctcggatgtg tacctgctgc
      121 agaagatggt gaggctatgg gcagggccac cgtggtacct ttgccctatg agaggctgct
      181 cagggagccg gggctactgg cggtgcaggg gctgcccgag ggcctggcct tccggagacc
      241 agcagaatat gaccccaagg cactcatggc cattttggag catagtcacc gaattcggtt
      301 taagctcagg aggcctcctg atgacggtgg gcaggacaca aaggcgctgg tggagatgaa
      361 cggtatctct ctgctaccca aggggtcccg agactgtggt ctgcatggcc aggcctccaa
      421 ggtctctccc caagacctga cccccaccgc caccccatcc tccatggcca acttcctgta
      481 cagcacttcg atgcccaacc acaccatccg ggaactcaag caggaggtgc caacctgccc
      541 gttgaccccc agcgacctgg gcttgggctg gcctgtgcct gagccccatg tccccagcac
      601 ccaagatttc tctgattgct gtggacaggc gcctgcaggg cctgctgggc ctctcatcca
      661 gaatgtccac gcttccaagc gtatcctctt ctccatcgtc cacgacaagt cagagaagtg
      721 ggatcccttc atcaaggaaa tggaggacat caacaccctg cgggagtgcg tgcagattct
      781 gtttaacagc agatacgcgg aagccctggg cctggaccat atggttcctg tgccctacag
      841 gaagattgcc tgtgaccctg aggctgtgga gattgtgggt atcccagaca agatcccctt
      901 caagcggccc tgcacttatg gagtgccgaa gctgaagaga attctggagg agcggcacag
      961 cattcacttc attatcaaga ggatgttcga tgagcgcatt ttcacaggga acaagtttac
     1021 caaagacccc atgaagctgg agccagctag cccaccagaa gacactgcca cagaagtctg
     1081 tagggacagc atgctggacc tggctgggac tgcttggtca gacatgagca gcgtctctga
     1141 agactgtggg ccaggaacct caggagagat aggaatgttg aggcctatca aaatcgagcc
     1201 cgaggagctg gacattattc aggttactgt ctcagatcct tcacctacct ctgaggagat
     1261 gactgactca ctacctgggc atctaccctc agaagattcc ggttatggga tggaaatgcc
     1321 ggctgacaaa ggccccagtg aggaaccgtg gcaagaagag aggccggcag aagagagccc
     1381 tggtgatgtg atcaggcccc tccggaagca ggtggaaatg ctgttcaaca caaaatatgc
     1441 caaagccatt ggtacctcag agccagtcaa ggtgccctac tccaagttcc tgatgcaccc
     1501 agaggagctc ttcgtactgg gactgcctga aggcatctct cttcgaagac ccaactgctt
     1561 tgggattgcc aagctgagga agattctgga agccagcaac agtatccagt ttgtcattaa
     1621 gagacccgaa ctactcactg acggtgtcaa agaacctgtt atggacactc aagagaggga
     1681 ctcctgggac cctcttgtgg acgagacccc gaagagacag ggccttcaag aaagctctcg
     1741 gattcaagaa aattacaaca ccagactctc tcggatcgac atcgccaaca cgcttaggga
     1801 acaagtccaa gacctgttta acaagaaata cggtgaagct ctgggcatca aatacccagt
     1861 gcaggtgccc tacaagcgaa tcaaaagcaa tccaggctcg gtaatcatcg aaggcctgcc
     1921 ccccgggatc ccattccgca agccctgcac ctttggctcc cagaacctgg aaaggatcct
     1981 ctctgtggct gacaagatca agttcaccgt caccaggcca tttcaaggac tcatcccaaa
     2041 gcctgaaacc aaaattctca ctacaggaca cgaagctgga aaaaccacca gaccaaggag
     2101 accgcaacaa gacagctggc agccagatga ggatgatgcc aacagactgg gggagaaggt
     2161 gatcctccga gagcaggtga aggagctctt caatgagaaa tacggtgagg ccctgggact
     2221 gaatcggcct gtgctggtcc cgtacaagct gatccgggac agcccggatg ccgtggaggt
     2281 gaaaggcctc ccagatgaca tccccttccg gaaccccaac acctacgaca tccatcggct
     2341 ggagaagatc ctgaaggcca gagaccacgt acggatggtt atcatcaacc agctccaacc
     2401 ctttacggaa gtctgcaatg accccaaggt gccagatgag gacgactcta acaagctcgg
     2461 gaagaaggtg atcctccgag agcaggtgaa ggagctcttc aatgagaaat acggtgaggc
     2521 cctgggactg aatcggcctg tgctggtccc gtacaagctg atccgggaca gcccggatgc
     2581 cgtggaggtg aaaggcctcc cagatgacat ccccttccgg aaccccaaca cctacgacat
     2641 ccatcggctg gagaagatcc tgaaggccag agaccacgta cggatggtta tcatcaacca
     2701 gctccaacct tttggggatg tctgcaacaa tgccaaggtg ccagccaaag acaacattcc
     2761 caagcgcaag agaaagcggg tctctgaagg caactcagtc tcctcctctt cctcttcttc
     2821 atcctcctcg tcctctaatc cagagtctgt ggcgtccacc aaccagatct ccctcgtggt
     2881 aaagtcacgc ggatctgaac ttcaccctaa ttctgtgtgg cctttgcccc tccctcgggc
     2941 agggccatcc acagctccag gaactgggag gcactgggct ctgagaggga ctcagccaac
     3001 ccgagaggtg caggcacatc cactggtctt gcccacaaga tagaccgagg ctctgtgcaa
     3061 ttggcacggt gcttgaagtg tgggtgtcac ctgcagtgtg tgtaaacaag gagcccgagg
     3121 gtagatggtc acatgacaga actcgccctc catcacctgt cggccacatt gcttcgtttg
     3181 gccctttcct gattcaaagg aatactcatg taaaacaaaa caaaacaaaa caaaactggg
     3241 tgtagtgtct tatgccctta atcccagtag cggagggggg gggggggaga tcagaaattc
     3301 aaggccagct cgaggctata tgagacccca tctcaaagaa aactgctaaa cagggggtta
     3361 agggtgtggc ttagtcagca gggtacttgc cttgcatgca caaagccctg ggttctattc
     3421 ccagcaccgc ataaaccgga cctggtagta catgcctatg atcctaacac gggaagaagt
     3481 agaggcagga ggtcataagt tcaaggtcag cctcagctac gtagaaagtt tgaggctagc
     3541 ctgggccatg tgagactgcc tcaagaaaac gaaatggagg aaagaaagac tgattttttt
     3601 ttccctccat tttcctctta ttgactactc cctccctcca ccccaagagg tgagacagtg
     3661 tctgtggggt gaagctgggt gaagccctca atgggctcca gtccatatat tgagcccctg
     3721 gaacacaggt ggggacaatc accacgttct acctgcatga cctcggacag atctctttcc
     3781 ctctccaggc ctcagtgtct gcgtactaag ttaacgtttg agctcaccct caaagcaagc
     3841 gcgctgatta ttctgggagt tcctccgtgt cacctggagt cctaacgtgg tccctctatc
     3901 ccccctcccc ctctctctag cagtggccag tgtacatggt ggactattcc ggactaaacg
     3961 tgcagcttcc aggccccctt gattattaga cctcagagcc gaatcaggac ctcaactcaa
     4021 aagactaaag gaaaatgtaa tttatgtaca aagtatattc ggatatgtat cgatgccttt
     4081 tagtttttcc aatgattttt acactatatt cctgccgcca aggccttttt aaataagtaa
     4141 agaaaacgaa aaagaacaaa
//
