LOCUS       XM_039089092            3084 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GTF2I repeat domain containing 1
            (Gtf2ird1), transcript variant X20, mRNA.
ACCESSION   XM_039089092
VERSION     XM_039089092.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3084
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3084
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /note="GTF2I repeat domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 4 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     91 samples with support for all annotated introns"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
     CDS             1..2913
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X17"
                     /protein_id="XP_038945020.1"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSIPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVSPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGLGWPVPEPHVPSTQDFSDCCGQAPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTATEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIGMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWQEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVMDTQERDSWDPLVDETPKRQGLQENYNTRLS
                     RIDIANTLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP
                     CTFGSQNLERILSVADKIKFTVTRPFQGLIPKPETKILTTGHEAGKTTRPRRPQQDSW
                     QPDEDDANRLGEKVILREQVKELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLP
                     DDIPFRNPNTYDIHRLEKILKARDHVRMVIINQLQPFGDVCNNAKVPAKDNIPKRKRK
                     RVSEGNSVSSSSSSSSSSSSNPESVASTNQISLVQWPVYMVDYSGLNVQLPGPLDY"
ORIGIN      
        1 atggccttgc tggggaagca ttgtgacatc cccaccaacg gctgtgggtc tgagcgctgg
       61 aactccacct ttgcccgcaa ggacgagctc atcaacagtc tggtgtctgc cttagactcc
      121 atgtgctcag cgctctccaa gctgaacaca gaggtggcct gcgtggcggt acacaatgag
      181 agcgtcttcg tgatgggcac cgagaaggga agggtgtttt tgaatactcg gaaggagcta
      241 cagtcagact tcctcaggtt ctgccgggga cccctgtgga acgatccaga agcaggacac
      301 cctaaaaagg tgcagcgctg cgaaggtggt ggccggagca tcccgcggtc ctctctggag
      361 cagtgctcgg atgtgtacct gctgcagaag atggtagagg aagtgtttga tgttctttat
      421 agtgaggcta tgggcagggc caccgtggta cctttgccct atgagaggct gctcagggag
      481 ccggggctac tggcggtgca ggggctgccc gagggcctgg ccttccggag accagcagaa
      541 tatgacccca aggcactcat ggccattttg gagcatagtc accgaattcg gtttaagctc
      601 aggaggcctc ctgatgacgg tgggcaggac acaaaggcgc tggtggagat gaacggtatc
      661 tctctgctac ccaaggggtc ccgagactgt ggtctgcatg gccaggcctc caaggtctct
      721 ccccaagacc tgacccccac cgccacccca tcctccatgg ccaacttcct gtacagcact
      781 tcgatgccca accacaccat ccgggaactc aagcaggagg tgccaacctg cccgttgacc
      841 cccagcgacc tgggcttggg ctggcctgtg cctgagcccc atgtccccag cacccaagat
      901 ttctctgatt gctgtggaca ggcgcctgca gggcctgctg ggcctctcat ccagaatgtc
      961 cacgcttcca agcgtatcct cttctccatc gtccacgaca agtcagagaa gtgggatccc
     1021 ttcatcaagg aaatggagga catcaacacc ctgcgggagt gcgtgcagat tctgtttaac
     1081 agcagatacg cggaagccct gggcctggac catatggttc ctgtgcccta caggaagatt
     1141 gcctgtgacc ctgaggctgt ggagattgtg ggtatcccag acaagatccc cttcaagcgg
     1201 ccctgcactt atggagtgcc gaagctgaag agaattctgg aggagcggca cagcattcac
     1261 ttcattatca agaggatgtt cgatgagcgc attttcacag ggaacaagtt taccaaagac
     1321 cccatgaagc tggagccagc tagcccacca gaagacactg ccacagaagt ctgtagggac
     1381 agcatgctgg acctggctgg gactgcttgg tcagacatga gcagcgtctc tgaagactgt
     1441 gggccaggaa cctcaggaga gataggaatg ttgaggccta tcaaaatcga gcccgaggag
     1501 ctggacatta ttcaggttac tgtctcagat ccttcaccta cctctgagga gatgactgac
     1561 tcactacctg ggcatctacc ctcagaagat tccggttatg ggatggaaat gccggctgac
     1621 aaaggcccca gtgaggaacc gtggcaagaa gagaggccgg cagaagagag ccctggtgat
     1681 gtgatcaggc ccctccggaa gcaggtggaa atgctgttca acacaaaata tgccaaagcc
     1741 attggtacct cagagccagt caaggtgccc tactccaagt tcctgatgca cccagaggag
     1801 ctcttcgtac tgggactgcc tgaaggcatc tctcttcgaa gacccaactg ctttgggatt
     1861 gccaagctga ggaagattct ggaagccagc aacagtatcc agtttgtcat taagagaccc
     1921 gaactactca ctgacggtgt caaagaacct gttatggaca ctcaagagag ggactcctgg
     1981 gaccctcttg tggacgagac cccgaagaga cagggccttc aagaaaatta caacaccaga
     2041 ctctctcgga tcgacatcgc caacacgctt agggaacaag tccaagacct gtttaacaag
     2101 aaatacggtg aagctctggg catcaaatac ccagtgcagg tgccctacaa gcgaatcaaa
     2161 agcaatccag gctcggtaat catcgaaggc ctgccccccg ggatcccatt ccgcaagccc
     2221 tgcacctttg gctcccagaa cctggaaagg atcctctctg tggctgacaa gatcaagttc
     2281 accgtcacca ggccatttca aggactcatc ccaaagcctg aaaccaaaat tctcactaca
     2341 ggacacgaag ctggaaaaac caccagacca aggagaccgc aacaagacag ctggcagcca
     2401 gatgaggatg atgccaacag actgggggag aaggtgatcc tccgagagca ggtgaaggag
     2461 ctcttcaatg agaaatacgg tgaggccctg ggactgaatc ggcctgtgct ggtcccgtac
     2521 aagctgatcc gggacagccc ggatgccgtg gaggtgaaag gcctcccaga tgacatcccc
     2581 ttccggaacc ccaacaccta cgacatccat cggctggaga agatcctgaa ggccagagac
     2641 cacgtacgga tggttatcat caaccagctc caaccttttg gggatgtctg caacaatgcc
     2701 aaggtgccag ccaaagacaa cattcccaag cgcaagagaa agcgggtctc tgaaggcaac
     2761 tcagtctcct cctcttcctc ttcttcatcc tcctcgtcct ctaatccaga gtctgtggcg
     2821 tccaccaacc agatctccct cgtgcagtgg ccagtgtaca tggtggacta ttccggacta
     2881 aacgtgcagc ttccaggccc ccttgattat tagacctcag agccgaatca ggacctcaac
     2941 tcaaaagact aaaggaaaat gtaatttatg tacaaagtat attcggatat gtatcgatgc
     3001 cttttagttt ttccaatgat ttttacacta tattcctgcc gccaaggcct ttttaaataa
     3061 gtaaagaaaa cgaaaaagaa caaa
//
