LOCUS       XM_039089086            3330 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GTF2I repeat domain containing 1
            (Gtf2ird1), transcript variant X14, mRNA.
ACCESSION   XM_039089086
VERSION     XM_039089086.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089086.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3330
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /note="GTF2I repeat domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 12 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     22 samples with support for all annotated introns"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
     CDS             1..3159
                     /gene="Gtf2ird1"
                     /gene_synonym="Gtf3"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X11"
                     /protein_id="XP_038945014.1"
                     /db_xref="GeneID:246770"
                     /db_xref="RGD:620856"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSIPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVSPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGLGWPVPEPHVPSTQDFSDCCGQAPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTATEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIGMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWQEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVMDTQERDSWDPLVDETPKRQGLQESSRIQEN
                     YNTRLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPG
                     IPFRKPCTFGSQNLERILSVADKIKFTVTRPFQGLIPKPDEDDANRLGEKVILREQVK
                     ELFNEKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILK
                     ARDHVRMVIINQLQPFTEVCNDPKVPDEDDSNKLGKKVILREQVKELFNEKYGEALGL
                     NRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKARDHVRMVIINQL
                     QPFGDVCNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSSNPESVASTNQISLV
                     QWPVYMVDYSGLNVQLPGPLDY"
ORIGIN      
        1 atggccttgc tggggaagca ttgtgacatc cccaccaacg gctgtgggtc tgagcgctgg
       61 aactccacct ttgcccgcaa ggacgagctc atcaacagtc tggtgtctgc cttagactcc
      121 atgtgctcag cgctctccaa gctgaacaca gaggtggcct gcgtggcggt acacaatgag
      181 agcgtcttcg tgatgggcac cgagaaggga agggtgtttt tgaatactcg gaaggagcta
      241 cagtcagact tcctcaggtt ctgccgggga cccctgtgga acgatccaga agcaggacac
      301 cctaaaaagg tgcagcgctg cgaaggtggt ggccggagca tcccgcggtc ctctctggag
      361 cagtgctcgg atgtgtacct gctgcagaag atggtagagg aagtgtttga tgttctttat
      421 agtgaggcta tgggcagggc caccgtggta cctttgccct atgagaggct gctcagggag
      481 ccggggctac tggcggtgca ggggctgccc gagggcctgg ccttccggag accagcagaa
      541 tatgacccca aggcactcat ggccattttg gagcatagtc accgaattcg gtttaagctc
      601 aggaggcctc ctgatgacgg tgggcaggac acaaaggcgc tggtggagat gaacggtatc
      661 tctctgctac ccaaggggtc ccgagactgt ggtctgcatg gccaggcctc caaggtctct
      721 ccccaagacc tgacccccac cgccacccca tcctccatgg ccaacttcct gtacagcact
      781 tcgatgccca accacaccat ccgggaactc aagcaggagg tgccaacctg cccgttgacc
      841 cccagcgacc tgggcttggg ctggcctgtg cctgagcccc atgtccccag cacccaagat
      901 ttctctgatt gctgtggaca ggcgcctgca gggcctgctg ggcctctcat ccagaatgtc
      961 cacgcttcca agcgtatcct cttctccatc gtccacgaca agtcagagaa gtgggatccc
     1021 ttcatcaagg aaatggagga catcaacacc ctgcgggagt gcgtgcagat tctgtttaac
     1081 agcagatacg cggaagccct gggcctggac catatggttc ctgtgcccta caggaagatt
     1141 gcctgtgacc ctgaggctgt ggagattgtg ggtatcccag acaagatccc cttcaagcgg
     1201 ccctgcactt atggagtgcc gaagctgaag agaattctgg aggagcggca cagcattcac
     1261 ttcattatca agaggatgtt cgatgagcgc attttcacag ggaacaagtt taccaaagac
     1321 cccatgaagc tggagccagc tagcccacca gaagacactg ccacagaagt ctgtagggac
     1381 agcatgctgg acctggctgg gactgcttgg tcagacatga gcagcgtctc tgaagactgt
     1441 gggccaggaa cctcaggaga gataggaatg ttgaggccta tcaaaatcga gcccgaggag
     1501 ctggacatta ttcaggttac tgtctcagat ccttcaccta cctctgagga gatgactgac
     1561 tcactacctg ggcatctacc ctcagaagat tccggttatg ggatggaaat gccggctgac
     1621 aaaggcccca gtgaggaacc gtggcaagaa gagaggccgg cagaagagag ccctggtgat
     1681 gtgatcaggc ccctccggaa gcaggtggaa atgctgttca acacaaaata tgccaaagcc
     1741 attggtacct cagagccagt caaggtgccc tactccaagt tcctgatgca cccagaggag
     1801 ctcttcgtac tgggactgcc tgaaggcatc tctcttcgaa gacccaactg ctttgggatt
     1861 gccaagctga ggaagattct ggaagccagc aacagtatcc agtttgtcat taagagaccc
     1921 gaactactca ctgacggtgt caaagaacct gttatggaca ctcaagagag ggactcctgg
     1981 gaccctcttg tggacgagac cccgaagaga cagggccttc aagaaagctc tcggattcaa
     2041 gaaaattaca acaccagact ctctcggatc gacatcgcca acacgcttag ggaacaagtc
     2101 caagacctgt ttaacaagaa atacggtgaa gctctgggca tcaaataccc agtgcaggtg
     2161 ccctacaagc gaatcaaaag caatccaggc tcggtaatca tcgaaggcct gccccccggg
     2221 atcccattcc gcaagccctg cacctttggc tcccagaacc tggaaaggat cctctctgtg
     2281 gctgacaaga tcaagttcac cgtcaccagg ccatttcaag gactcatccc aaagcctgat
     2341 gaggatgatg ccaacagact gggggagaag gtgatcctcc gagagcaggt gaaggagctc
     2401 ttcaatgaga aatacggtga ggccctggga ctgaatcggc ctgtgctggt cccgtacaag
     2461 ctgatccggg acagcccgga tgccgtggag gtgaaaggcc tcccagatga catccccttc
     2521 cggaacccca acacctacga catccatcgg ctggagaaga tcctgaaggc cagagaccac
     2581 gtacggatgg ttatcatcaa ccagctccaa ccctttacgg aagtctgcaa tgaccccaag
     2641 gtgccagatg aggacgactc taacaagctc gggaagaagg tgatcctccg agagcaggtg
     2701 aaggagctct tcaatgagaa atacggtgag gccctgggac tgaatcggcc tgtgctggtc
     2761 ccgtacaagc tgatccggga cagcccggat gccgtggagg tgaaaggcct cccagatgac
     2821 atccccttcc ggaaccccaa cacctacgac atccatcggc tggagaagat cctgaaggcc
     2881 agagaccacg tacggatggt tatcatcaac cagctccaac cttttgggga tgtctgcaac
     2941 aatgccaagg tgccagccaa agacaacatt cccaagcgca agagaaagcg ggtctctgaa
     3001 ggcaactcag tctcctcctc ttcctcttct tcatcctcct cgtcctctaa tccagagtct
     3061 gtggcgtcca ccaaccagat ctccctcgtg cagtggccag tgtacatggt ggactattcc
     3121 ggactaaacg tgcagcttcc aggccccctt gattattaga cctcagagcc gaatcaggac
     3181 ctcaactcaa aagactaaag gaaaatgtaa tttatgtaca aagtatattc ggatatgtat
     3241 cgatgccttt tagtttttcc aatgattttt acactatatt cctgccgcca aggccttttt
     3301 aaataagtaa agaaaacgaa aaagaacaaa
//
