LOCUS       XM_039089536            3283 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus general transcription factor II I
            (Gtf2i), transcript variant X13, mRNA.
ACCESSION   XM_039089536
VERSION     XM_039089536.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089536.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3283
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /note="general transcription factor II I; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 114 ESTs, 4 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 82 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
     CDS             16..2214
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /codon_start=1
                     /product="general transcription factor II-I isoform X12"
                     /protein_id="XP_038945464.1"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
                     /translation="MTHFPIEGSHHSSEGNEGAEVEVPAEDSTQHVPSETSEDPEVEV
                     TIEDDDYSPPTKRPKSSEPPPPPPVPEPTNAGKRKVREFNFEKWNARITDLRKQVEEL
                     FERKYAQAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAK
                     ERIRFVIKKHELLNSTREDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGS
                     TEAKAVPYQKFEAYPNDLYVEGLPENIPFRSPSWYGIPRLEKIIQVGNRIKFVIKRPE
                     LLTHSTTEVTQPRTNTPVKEDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVF
                     ESNPEFLYVEGLPEGIPFRSPTWFGIPRLERIVRGSNKIKFVVKKPELVVSYLPPGMA
                     SKINTKALQSPKRPRSPGSNSKVPEIEVTVEGPNNNSPQTSTVRTPTQTNGSNVPFKP
                     RGREFSFEAWNAKITDLKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGL
                     PEGVPFRRPSTFGIPRLEKILRNKAKIKFIIKKPEMFETAIKESTSSKSPPRKTNSSP
                     SVNTTASGVEDLNIIQVTIPDDDNERLSKVEKARQLREQVNDLFSRKFGEAIGMGFPV
                     KVPYRKITINPGCVVVDGMPPGVSFKAPSYLEISSMRRILDSAEFIKFTVIRPFPGLV
                     INNQLVDQNESEGPVIQESAEASQLEVPATEEIKETDGSSQIKQEPDPTW"
ORIGIN      
        1 tctcgaaatg ggtacatgac acactttccc attgaaggaa gccatcactc ctcagaaggc
       61 aacgagggag cggaagtgga agtgccagca gaagattcta ctcaacatgt cccttcagaa
      121 accagtgagg accctgaagt tgaggtgacc attgaagatg atgattattc tccacctacc
      181 aagaggccaa agagcagtga gccgccccca cccccaccgg tcccagagcc caccaacgcc
      241 ggcaagcgca aagtgaggga gttcaacttt gagaaatgga acgcgcgcat cactgaccta
      301 cggaaacaag tggaagaatt gtttgaaaga aaatacgctc aagctataaa agccaaaggc
      361 ccggtgacga tcccataccc tcttttccag tcgcacgtcg aagatctgta tgtagagggc
      421 cttcctgaag ggatcccctt tagaaggcca tcaacgtacg gcattcctcg cctggagagg
      481 atattgctgg caaaggagag gatccgcttt gtgatcaaga aacatgagct tctgaactca
      541 acacgagaag atttacagct ggacaagccc gcatcaggag tgaaggaaga gtggtatgct
      601 cgtatcacca aactgaggaa gatggttgac cagctcttct gcaagaaatt tgctgaggcc
      661 ttgggaagca cagaagccaa ggctgtaccg taccaaaaat tcgaggccta tcccaatgat
      721 ctctatgtgg aaggacttcc agaaaacatt cctttccgaa gcccctcatg gtatggaatc
      781 ccaagactgg aaaaaatcat ccaagtgggc aatcgaatta aatttgttat caagagacca
      841 gaactgctga ctcacagtac aactgaggtg actcagccac ggacgaatac gccagtcaag
      901 gaagattgga acgtcaggat caccaagctc cgcaagcagg tggaggagat ctttaacttg
      961 aagtttgctc aagctcttgg cctcacagag gctgtgaagg tgccgtatcc tgtgttcgaa
     1021 tccaacccag aatttctgta tgtggaaggg ctccctgagg ggatcccctt ccgaagccct
     1081 acctggtttg ggattccacg ccttgagagg attgtccgtg ggagcaataa gatcaagttt
     1141 gttgttaaaa agcccgagct agttgtgtcc tacttgcctc ctgggatggc tagcaaaatc
     1201 aacactaaag cattgcagtc cccgaaacga ccacgaagcc ctgggagcaa ctccaaggtc
     1261 cctgaaatcg aggtcactgt ggaaggcccc aacaacaaca gtcctcagac ctctaccgtt
     1321 cgaactccta cccagaccaa cggttcaaac gttcccttca agcctcgagg gagagagttt
     1381 tcctttgagg cctggaacgc taagatcaca gacctgaagc agaaagtgga gaatctcttc
     1441 aatgaaaagt gcggggaagc tcttggcctt aagcaggctg tgaaagtacc gtttgcgcta
     1501 tttgagtcct tcccagagga cttctacgta gaaggcttac ccgagggcgt gcccttccga
     1561 agaccatcca cttttggcat tccaaggctg gagaagatcc tccggaacaa ggccaagata
     1621 aagttcatca ttaaaaaacc tgagatgttc gagacggcca tcaaagagag cacctcttcc
     1681 aaaagccctc cgaggaagac gaactcatcc cccagtgtca atacgacagc ctcaggtgtg
     1741 gaagatctta acatcattca ggtgacaatc ccagatgacg acaacgaacg actctccaaa
     1801 gtcgagaagg ccaggcagct tcgggagcaa gtcaacgacc tcttcagccg aaagtttggt
     1861 gaagctattg ggatgggctt ccccgtgaag gtcccctaca ggaaaatcac catcaaccct
     1921 ggctgcgtgg tggtcgatgg catgcccccg ggggtgtcct tcaaagcccc cagctatctg
     1981 gagatcagct ccatgagaag gatcttagat tctgctgagt ttatcaagtt cactgtcatt
     2041 agaccattcc caggactggt gattaataac cagctggttg atcagaatga gtctgaaggc
     2101 cctgtgatac aagaatcagc tgaggcaagc cagttggaag ttccagcaac agaagaaatc
     2161 aaagagacag atgggagctc acagatcaag caggagccag accccacgtg gtagaccgtg
     2221 gctctccagg ttcggctccc ggcgtgagtg gtggagaaga gctttcggac ccgctccggc
     2281 cagctctgta atatacttgt ataacagaaa taccttctat acaaaccttc ttttctactt
     2341 ttagatagaa atgtctactt tctcagcagt tctgtgaatt gaactacata gcgtgatgag
     2401 atgcgcgtgc ctggctggct tgggaatgca ctagaaggat tttgcagcag tgctggaagg
     2461 aggcggggat ggcagggacg actcttaggg tttctcatgc atcgggcaga gccttgggct
     2521 gaggggcgta tccccgtcag tgagctattc ctccagagca tcttggcttc cgcagggaag
     2581 gaaacccctg tgctagtcag tgcgttagtt tttctattga aaaccagttc cgtgatcttg
     2641 cactcagctc cccctcctgc ccaggggagg gctgctgtct gtgtatgtga ctaagcctcc
     2701 tcccgagttc cattatgagt cctctgtcct cactgtcatt caaagcaaag ccggccagtg
     2761 agcagccagt gcgtccgagt gcaactggag aggctgacct cggagtctct ctcgaggtta
     2821 ctttgcagca agtaaatttc tgggcgtatc cagaaggtca gaggccagtg gtcaggtgtg
     2881 catgcttgag cagctggatg actcaaccct ccctaaccac caggacctgc agtgacctgg
     2941 ggtgctctgg gtggagtcag gctggccttg tgtctgcctg gttggttgtc tctaaccacc
     3001 tgtctggcct cggtgccagg gtggggagtg gggtaccttg gtgtcctcgc cctctgtggg
     3061 gctccacgtg ggagctcgca gacgatgcca ctgtataagg cagcagctct cagcagttag
     3121 agggtgtgag ggcaccgctc tcagtagcgt caccacgatg ttcaccatgg gaaattatat
     3181 cacacggtag cagaaatagg cattttatgt gttccttata ttttacctca gattgtagat
     3241 atagggtaat aaataaaatc catccatgcc tttcacacgc aaa
//
