LOCUS       XM_017598365            3951 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus general transcription factor II I
            (Gtf2i), transcript variant X5, mRNA.
ACCESSION   XM_017598365
VERSION     XM_017598365.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017598365.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3951
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /note="general transcription factor II I; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 113 ESTs, 4 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 237 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
     CDS             6..2882
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /codon_start=1
                     /product="general transcription factor II-I isoform X5"
                     /protein_id="XP_017453854.1"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
                     /translation="MAQVAMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEV
                     ACIAVYETDVFVVGTERGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKCTTQANRM
                     SVDAVEIETLRKTVEDYFCFCYGKALGKSTVVPVPYEKMLRDQSAVAVQGLPEGVAFK
                     HPEHYDLATLKWILENKAGISFIIKRPFLEPKKHLGGRVMAADADRPMLSPGGSCGPI
                     KVKTEPTEDSGISLEMAAVTVKEESEDPDYYQYNIQGSHHSSEGNEGAEVEVPAEDDD
                     YSPPTKRPKSSEPPPPPPVPEPTNAGKRKVREFNFEKWNARITDLRKQVEELFERKYA
                     QAIKAKGPVTIPYPLFQSHVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFV
                     IKKHELLNSTREDLQLDKPASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAV
                     PYQKFEAYPNDLYVEGLPENIPFRSPSWYGIPRLEKIIQVGNRIKFVIKRPELLTHST
                     TEVTQPRTNTPVKEDWNVRITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEF
                     LYVEGLPEGIPFRSPTWFGIPRLERIVRGSNKIKFVVKKPELVVSYLPPGMASKINTK
                     ALQSPKRPRSPGSNSKVPEIEVTVEGPNNNSPQTSTVRTPTQTNGSNVPFKPRGREFS
                     FEAWNAKITDLKQKVENLFNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPF
                     RRPSTFGIPRLEKILRNKAKIKFIIKKPEMFETAIKESTSSKSPPRKTNSSPSVNTTA
                     SGVEDLNIIQVTIPDDDNERLSKVEKARQLREQVNDLFSRKFGEAIGMGFPVKVPYRK
                     ITINPGCVVVDGMPPGVSFKAPSYLEISSMRRILDSAEFIKFTVIRPFPGLVINNQLV
                     DQNESEGPVIQESAEASQLEVPATEEIKETDGSSQIKQEPDPTW"
ORIGIN      
        1 aaatcatggc ccaagtagcg atgtccgcgc tgcctgcgga ggatgaggag tcttcggaga
       61 gcaggatggt ggtgacgttc ctcatgtctg ccctggagtc catgtgtaaa gagctggcca
      121 agtccaaggc tgaggtggcc tgcatcgccg tgtatgagac agatgtgttt gtcgttggaa
      181 ccgaaagagg gcgtgctttt gtcaatacca gaaaagattt ccaaaaagat tttgtgaagt
      241 attgtgttga agaagaagaa aaggccgccg agatgcataa gatgaaatgt acaacccagg
      301 ccaaccggat gagcgtggat gctgtagaaa ttgagaccct cagaaaaacg gtggaggact
      361 atttctgctt ttgttatggg aaagccttag gcaaatccac agtggtccct gtgccatatg
      421 agaagatgct gcgtgaccag tcagctgtgg cggtgcaggg gcttcccgag ggggtcgcct
      481 tcaagcatcc cgagcactat gacctcgcaa ccttgaagtg gattctggag aacaaggcgg
      541 ggatttcctt catcatcaag agacctttcc tcgagccgaa gaaacacctt ggtggtcgag
      601 tgatggcggc cgatgctgac aggcccatgc tgtctccggg tggaagttgt ggccccatca
      661 aagtgaaaac tgagcccacg gaagattctg gcatttctct ggaaatggcc gctgtgacag
      721 tgaaggagga gtcagaagac cccgattact atcagtataa cattcaagga agccatcact
      781 cctcagaagg caacgaggga gcggaagtgg aagtgccagc agaagatgat gattattctc
      841 cacctaccaa gaggccaaag agcagtgagc cgcccccacc cccaccggtc ccagagccca
      901 ccaacgccgg caagcgcaaa gtgagggagt tcaactttga gaaatggaac gcgcgcatca
      961 ctgacctacg gaaacaagtg gaagaattgt ttgaaagaaa atacgctcaa gctataaaag
     1021 ccaaaggccc ggtgacgatc ccataccctc ttttccagtc gcacgtcgaa gatctgtatg
     1081 tagagggcct tcctgaaggg atccccttta gaaggccatc aacgtacggc attcctcgcc
     1141 tggagaggat attgctggca aaggagagga tccgctttgt gatcaagaaa catgagcttc
     1201 tgaactcaac acgagaagat ttacagctgg acaagcccgc atcaggagtg aaggaagagt
     1261 ggtatgctcg tatcaccaaa ctgaggaaga tggttgacca gctcttctgc aagaaatttg
     1321 ctgaggcctt gggaagcaca gaagccaagg ctgtaccgta ccaaaaattc gaggcctatc
     1381 ccaatgatct ctatgtggaa ggacttccag aaaacattcc tttccgaagc ccctcatggt
     1441 atggaatccc aagactggaa aaaatcatcc aagtgggcaa tcgaattaaa tttgttatca
     1501 agagaccaga actgctgact cacagtacaa ctgaggtgac tcagccacgg acgaatacgc
     1561 cagtcaagga agattggaac gtcaggatca ccaagctccg caagcaggtg gaggagatct
     1621 ttaacttgaa gtttgctcaa gctcttggcc tcacagaggc tgtgaaggtg ccgtatcctg
     1681 tgttcgaatc caacccagaa tttctgtatg tggaagggct ccctgagggg atccccttcc
     1741 gaagccctac ctggtttggg attccacgcc ttgagaggat tgtccgtggg agcaataaga
     1801 tcaagtttgt tgttaaaaag cccgagctag ttgtgtccta cttgcctcct gggatggcta
     1861 gcaaaatcaa cactaaagca ttgcagtccc cgaaacgacc acgaagccct gggagcaact
     1921 ccaaggtccc tgaaatcgag gtcactgtgg aaggccccaa caacaacagt cctcagacct
     1981 ctaccgttcg aactcctacc cagaccaacg gttcaaacgt tcccttcaag cctcgaggga
     2041 gagagttttc ctttgaggcc tggaacgcta agatcacaga cctgaagcag aaagtggaga
     2101 atctcttcaa tgaaaagtgc ggggaagctc ttggccttaa gcaggctgtg aaagtaccgt
     2161 ttgcgctatt tgagtccttc ccagaggact tctacgtaga aggcttaccc gagggcgtgc
     2221 ccttccgaag accatccact tttggcattc caaggctgga gaagatcctc cggaacaagg
     2281 ccaagataaa gttcatcatt aaaaaacctg agatgttcga gacggccatc aaagagagca
     2341 cctcttccaa aagccctccg aggaagacga actcatcccc cagtgtcaat acgacagcct
     2401 caggtgtgga agatcttaac atcattcagg tgacaatccc agatgacgac aacgaacgac
     2461 tctccaaagt cgagaaggcc aggcagcttc gggagcaagt caacgacctc ttcagccgaa
     2521 agtttggtga agctattggg atgggcttcc ccgtgaaggt cccctacagg aaaatcacca
     2581 tcaaccctgg ctgcgtggtg gtcgatggca tgcccccggg ggtgtccttc aaagccccca
     2641 gctatctgga gatcagctcc atgagaagga tcttagattc tgctgagttt atcaagttca
     2701 ctgtcattag accattccca ggactggtga ttaataacca gctggttgat cagaatgagt
     2761 ctgaaggccc tgtgatacaa gaatcagctg aggcaagcca gttggaagtt ccagcaacag
     2821 aagaaatcaa agagacagat gggagctcac agatcaagca ggagccagac cccacgtggt
     2881 agaccgtggc tctccaggtt cggctcccgg cgtgagtggt ggagaagagc tttcggaccc
     2941 gctccggcca gctctgtaat atacttgtat aacagaaata ccttctatac aaaccttctt
     3001 ttctactttt agatagaaat gtctactttc tcagcagttc tgtgaattga actacatagc
     3061 gtgatgagat gcgcgtgcct ggctggcttg ggaatgcact agaaggattt tgcagcagtg
     3121 ctggaaggag gcggggatgg cagggacgac tcttagggtt tctcatgcat cgggcagagc
     3181 cttgggctga ggggcgtatc cccgtcagtg agctattcct ccagagcatc ttggcttccg
     3241 cagggaagga aacccctgtg ctagtcagtg cgttagtttt tctattgaaa accagttccg
     3301 tgatcttgca ctcagctccc cctcctgccc aggggagggc tgctgtctgt gtatgtgact
     3361 aagcctcctc ccgagttcca ttatgagtcc tctgtcctca ctgtcattca aagcaaagcc
     3421 ggccagtgag cagccagtgc gtccgagtgc aactggagag gctgacctcg gagtctctct
     3481 cgaggttact ttgcagcaag taaatttctg ggcgtatcca gaaggtcaga ggccagtggt
     3541 caggtgtgca tgcttgagca gctggatgac tcaaccctcc ctaaccacca ggacctgcag
     3601 tgacctgggg tgctctgggt ggagtcaggc tggccttgtg tctgcctggt tggttgtctc
     3661 taaccacctg tctggcctcg gtgccagggt ggggagtggg gtaccttggt gtcctcgccc
     3721 tctgtggggc tccacgtggg agctcgcaga cgatgccact gtataaggca gcagctctca
     3781 gcagttagag ggtgtgaggg caccgctctc agtagcgtca ccacgatgtt caccatggga
     3841 aattatatca cacggtagca gaaataggca ttttatgtgt tccttatatt ttacctcaga
     3901 ttgtagatat agggtaataa ataaaatcca tccatgcctt tcacacgcaa a
//
