LOCUS       XM_017598360            4071 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus general transcription factor II I
            (Gtf2i), transcript variant X1, mRNA.
ACCESSION   XM_017598360
VERSION     XM_017598360.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598360.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598360.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4071
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4071
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /note="general transcription factor II I; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 117 ESTs, 4 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 215 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
     CDS             6..3002
                     /gene="Gtf2i"
                     /gene_synonym="Gtf2ird1"
                     /codon_start=1
                     /product="general transcription factor II-I isoform X1"
                     /protein_id="XP_017453849.1"
                     /db_xref="GeneID:353256"
                     /db_xref="RGD:727961"
                     /translation="MAQVAMSALPAEDEESSESRMVVTFLMSALESMCKELAKSKAEV
                     ACIAVYETDVFVVGTERGRAFVNTRKDFQKDFVKYCVEEEEKAAEMHKMKCTTQANRM
                     SVDAVEIETLRKTVEDYFCFCYGKALGKSTVVPVPYEKMLRDQSAVAVQGLPEGVAFK
                     HPEHYDLATLKWILENKAGISFIIKRPFLEPKKHLGGRVMAADADRPMLSPGGSCGPI
                     KVKTEPTEDSGISLEMAAVTVKEESEDPDYYQYNIQGPSETDDVDEKLPLSKALQGSH
                     HSSEGNEGAEVEVPAEDSTQHVPSETSEDPEVEVTIEDDDYSPPTKRPKSSEPPPPPP
                     VPEPTNAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQAIKAKGPVTIPYPLFQS
                     HVEDLYVEGLPEGIPFRRPSTYGIPRLERILLAKERIRFVIKKHELLNSTREDLQLDK
                     PASGVKEEWYARITKLRKMVDQLFCKKFAEALGSTEAKAVPYQKFEAYPNDLYVEGLP
                     ENIPFRSPSWYGIPRLEKIIQVGNRIKFVIKRPELLTHSTTEVTQPRTNTPVKEDWNV
                     RITKLRKQVEEIFNLKFAQALGLTEAVKVPYPVFESNPEFLYVEGLPEGIPFRSPTWF
                     GIPRLERIVRGSNKIKFVVKKPELVVSYLPPGMASKINTKALQSPKRPRSPGSNSKVP
                     EIEVTVEGPNNNSPQTSTVRTPTQTNGSNVPFKPRGREFSFEAWNAKITDLKQKVENL
                     FNEKCGEALGLKQAVKVPFALFESFPEDFYVEGLPEGVPFRRPSTFGIPRLEKILRNK
                     AKIKFIIKKPEMFETAIKESTSSKSPPRKTNSSPSVNTTASGVEDLNIIQVTIPDDDN
                     ERLSKVEKARQLREQVNDLFSRKFGEAIGMGFPVKVPYRKITINPGCVVVDGMPPGVS
                     FKAPSYLEISSMRRILDSAEFIKFTVIRPFPGLVINNQLVDQNESEGPVIQESAEASQ
                     LEVPATEEIKETDGSSQIKQEPDPTW"
ORIGIN      
        1 aaatcatggc ccaagtagcg atgtccgcgc tgcctgcgga ggatgaggag tcttcggaga
       61 gcaggatggt ggtgacgttc ctcatgtctg ccctggagtc catgtgtaaa gagctggcca
      121 agtccaaggc tgaggtggcc tgcatcgccg tgtatgagac agatgtgttt gtcgttggaa
      181 ccgaaagagg gcgtgctttt gtcaatacca gaaaagattt ccaaaaagat tttgtgaagt
      241 attgtgttga agaagaagaa aaggccgccg agatgcataa gatgaaatgt acaacccagg
      301 ccaaccggat gagcgtggat gctgtagaaa ttgagaccct cagaaaaacg gtggaggact
      361 atttctgctt ttgttatggg aaagccttag gcaaatccac agtggtccct gtgccatatg
      421 agaagatgct gcgtgaccag tcagctgtgg cggtgcaggg gcttcccgag ggggtcgcct
      481 tcaagcatcc cgagcactat gacctcgcaa ccttgaagtg gattctggag aacaaggcgg
      541 ggatttcctt catcatcaag agacctttcc tcgagccgaa gaaacacctt ggtggtcgag
      601 tgatggcggc cgatgctgac aggcccatgc tgtctccggg tggaagttgt ggccccatca
      661 aagtgaaaac tgagcccacg gaagattctg gcatttctct ggaaatggcc gctgtgacag
      721 tgaaggagga gtcagaagac cccgattact atcagtataa cattcaaggc ccttctgaaa
      781 ctgatgatgt tgatgaaaag ctcccccttt cgaaggcttt gcaaggaagc catcactcct
      841 cagaaggcaa cgagggagcg gaagtggaag tgccagcaga agattctact caacatgtcc
      901 cttcagaaac cagtgaggac cctgaagttg aggtgaccat tgaagatgat gattattctc
      961 cacctaccaa gaggccaaag agcagtgagc cgcccccacc cccaccggtc ccagagccca
     1021 ccaacgccgg caagcgcaaa gtgagggagt tcaactttga gaaatggaac gcgcgcatca
     1081 ctgacctacg gaaacaagtg gaagaattgt ttgaaagaaa atacgctcaa gctataaaag
     1141 ccaaaggccc ggtgacgatc ccataccctc ttttccagtc gcacgtcgaa gatctgtatg
     1201 tagagggcct tcctgaaggg atccccttta gaaggccatc aacgtacggc attcctcgcc
     1261 tggagaggat attgctggca aaggagagga tccgctttgt gatcaagaaa catgagcttc
     1321 tgaactcaac acgagaagat ttacagctgg acaagcccgc atcaggagtg aaggaagagt
     1381 ggtatgctcg tatcaccaaa ctgaggaaga tggttgacca gctcttctgc aagaaatttg
     1441 ctgaggcctt gggaagcaca gaagccaagg ctgtaccgta ccaaaaattc gaggcctatc
     1501 ccaatgatct ctatgtggaa ggacttccag aaaacattcc tttccgaagc ccctcatggt
     1561 atggaatccc aagactggaa aaaatcatcc aagtgggcaa tcgaattaaa tttgttatca
     1621 agagaccaga actgctgact cacagtacaa ctgaggtgac tcagccacgg acgaatacgc
     1681 cagtcaagga agattggaac gtcaggatca ccaagctccg caagcaggtg gaggagatct
     1741 ttaacttgaa gtttgctcaa gctcttggcc tcacagaggc tgtgaaggtg ccgtatcctg
     1801 tgttcgaatc caacccagaa tttctgtatg tggaagggct ccctgagggg atccccttcc
     1861 gaagccctac ctggtttggg attccacgcc ttgagaggat tgtccgtggg agcaataaga
     1921 tcaagtttgt tgttaaaaag cccgagctag ttgtgtccta cttgcctcct gggatggcta
     1981 gcaaaatcaa cactaaagca ttgcagtccc cgaaacgacc acgaagccct gggagcaact
     2041 ccaaggtccc tgaaatcgag gtcactgtgg aaggccccaa caacaacagt cctcagacct
     2101 ctaccgttcg aactcctacc cagaccaacg gttcaaacgt tcccttcaag cctcgaggga
     2161 gagagttttc ctttgaggcc tggaacgcta agatcacaga cctgaagcag aaagtggaga
     2221 atctcttcaa tgaaaagtgc ggggaagctc ttggccttaa gcaggctgtg aaagtaccgt
     2281 ttgcgctatt tgagtccttc ccagaggact tctacgtaga aggcttaccc gagggcgtgc
     2341 ccttccgaag accatccact tttggcattc caaggctgga gaagatcctc cggaacaagg
     2401 ccaagataaa gttcatcatt aaaaaacctg agatgttcga gacggccatc aaagagagca
     2461 cctcttccaa aagccctccg aggaagacga actcatcccc cagtgtcaat acgacagcct
     2521 caggtgtgga agatcttaac atcattcagg tgacaatccc agatgacgac aacgaacgac
     2581 tctccaaagt cgagaaggcc aggcagcttc gggagcaagt caacgacctc ttcagccgaa
     2641 agtttggtga agctattggg atgggcttcc ccgtgaaggt cccctacagg aaaatcacca
     2701 tcaaccctgg ctgcgtggtg gtcgatggca tgcccccggg ggtgtccttc aaagccccca
     2761 gctatctgga gatcagctcc atgagaagga tcttagattc tgctgagttt atcaagttca
     2821 ctgtcattag accattccca ggactggtga ttaataacca gctggttgat cagaatgagt
     2881 ctgaaggccc tgtgatacaa gaatcagctg aggcaagcca gttggaagtt ccagcaacag
     2941 aagaaatcaa agagacagat gggagctcac agatcaagca ggagccagac cccacgtggt
     3001 agaccgtggc tctccaggtt cggctcccgg cgtgagtggt ggagaagagc tttcggaccc
     3061 gctccggcca gctctgtaat atacttgtat aacagaaata ccttctatac aaaccttctt
     3121 ttctactttt agatagaaat gtctactttc tcagcagttc tgtgaattga actacatagc
     3181 gtgatgagat gcgcgtgcct ggctggcttg ggaatgcact agaaggattt tgcagcagtg
     3241 ctggaaggag gcggggatgg cagggacgac tcttagggtt tctcatgcat cgggcagagc
     3301 cttgggctga ggggcgtatc cccgtcagtg agctattcct ccagagcatc ttggcttccg
     3361 cagggaagga aacccctgtg ctagtcagtg cgttagtttt tctattgaaa accagttccg
     3421 tgatcttgca ctcagctccc cctcctgccc aggggagggc tgctgtctgt gtatgtgact
     3481 aagcctcctc ccgagttcca ttatgagtcc tctgtcctca ctgtcattca aagcaaagcc
     3541 ggccagtgag cagccagtgc gtccgagtgc aactggagag gctgacctcg gagtctctct
     3601 cgaggttact ttgcagcaag taaatttctg ggcgtatcca gaaggtcaga ggccagtggt
     3661 caggtgtgca tgcttgagca gctggatgac tcaaccctcc ctaaccacca ggacctgcag
     3721 tgacctgggg tgctctgggt ggagtcaggc tggccttgtg tctgcctggt tggttgtctc
     3781 taaccacctg tctggcctcg gtgccagggt ggggagtggg gtaccttggt gtcctcgccc
     3841 tctgtggggc tccacgtggg agctcgcaga cgatgccact gtataaggca gcagctctca
     3901 gcagttagag ggtgtgaggg caccgctctc agtagcgtca ccacgatgtt caccatggga
     3961 aattatatca cacggtagca gaaataggca ttttatgtgt tccttatatt ttacctcaga
     4021 ttgtagatat agggtaataa ataaaatcca tccatgcctt tcacacgcaa a
//
