LOCUS       XM_006253231            1776 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus general transcription factor IIE
            subunit 2 (Gtf2e2), transcript variant X3, mRNA.
ACCESSION   XM_006253231
VERSION     XM_006253231.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006253231.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006253231.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1776
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1776
                     /gene="Gtf2e2"
                     /note="general transcription factor IIE subunit 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 81 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:306516"
                     /db_xref="RGD:1310134"
     CDS             150..905
                     /gene="Gtf2e2"
                     /codon_start=1
                     /product="transcription initiation factor IIE subunit beta
                     isoform X2"
                     /protein_id="XP_006253293.1"
                     /db_xref="GeneID:306516"
                     /db_xref="RGD:1310134"
                     /translation="MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSKKKKAKVE
                     HGGSSGSKQNSDHNNGSFNLKALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEI
                     LDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAFKPKYNLKDKKALLRLLDNHDQ
                     RGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKKILFFNDKSCQFSVDEGKIR
                     HPLLDSASKCLHANICMQTCMNLYVHMQYIHTY"
ORIGIN      
        1 cagtgacgca cgcgcttttc ggagcagcgt ttcgcggtgg ttgccgggag caagcgtcca
       61 gctgccgcac caggaagtgg agggcggagc cgggactgag tcgccgcctc gggctcggag
      121 gccggaggct cgaccccctc agcagcatta tggacccaag cctgttgaga gatcgagaac
      181 tgttcaaaaa acgagctctt tccactcctg tggtagagaa acgtgctgtg ccttcagagt
      241 caccctcctc ctcatccaag aagaagaagg caaaagtcga gcatggggga tcatcaggct
      301 ctaaacaaaa ttcagatcat aacaatggat catttaactt gaaagctctg tctggaagct
      361 ctggatataa gttcggtgtt cttgctaaga ttgtgaatta tatgaaaaca cgacatcagc
      421 gaggagatac gcatccctta actctggaag agattttgga tgaaacacag cacttagaca
      481 ttggactcaa gcagaaacaa tggctaatga cagaggcttt agtcaacaat cccaaaattg
      541 aagtagtaga tgggaaatac gccttcaaac ctaagtacaa cttgaaagat aagaaggccc
      601 tgctcaggct tctagataac catgaccagc gaggactggg aggcattctc ttagaagaca
      661 tagaagaggg attgcctaat tctcagaaag ctgtcaaggc tttaggggac cagattctat
      721 ttgtaagtcg tcctgataag aagaaaatac tattcttcaa tgataaaagc tgtcagtttt
      781 ctgtggatga agggaaaatc agacacccac ttctggactc tgcaagcaag tgtctgcatg
      841 caaacatctg catgcaaacg tgtatgaacc tctacgtgca tatgcaatat atacacacat
      901 actgataatt ttaaaaatga atcttaaaaa gaaaaaccct ggttattagg tagttgggaa
      961 cttctagctc cttcttagat cataccccta tgccatgcca ggaatctgaa aatttaggac
     1021 ctttttagtc tgtcagggat ctgaggttac agaacagtct atgaacagat atcccaagag
     1081 aagatgaggt gtggatactc actgagatag acagaatgag cactaatcaa aagaatgtag
     1141 ctaaaagtgt gacggtatta ctaaagacct agtactgatt agtatgagga cacagatctt
     1201 aagggtgctg tggattcagg ggtacaaatt cccccctcca agcccttctc catagactcc
     1261 attagattct tagcagcgaa ggttaaggct gttcttctag agaacctatg acttgatttg
     1321 atttctagca cccacccaca tggtggctca caattcaatt tctagggcct ctgatgttct
     1381 tgtgacctcc actgccctgc tcacatatgg tgcacaacat acatgcagga gaaatacccg
     1441 tagtaatgtg gagttccaga gcacacgcag acataggaga gacagtgtag cagggaaacc
     1501 caagactgga catcagcagc cactgaaaac acttctggca aaccaggccc tgtcatgaac
     1561 acaaggtgtg gctttaagaa ttggaagcta gttcattatg gctaacacga gatagcagaa
     1621 gatcttgctg accaagctca caccctgact ggattgactc actctctgca ggcttggcag
     1681 aggaaaggcg ttcccatttc caggcataca gactattaac tctgatttca actatcccac
     1741 agaggatgtc ctgcttttaa aaaaaaaaaa aaaaaa
//
