LOCUS       NM_001012136            1602 bp    mRNA    linear   ROD 18-OCT-2024
DEFINITION  Rattus norvegicus general transcription factor 2A subunit 1 like
            (Gtf2a1l), mRNA.
ACCESSION   NM_001012136 XM_237507
VERSION     NM_001012136.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1602)
  AUTHORS   Swaminathan,S., Huentelman,M.J., Corneveaux,J.J., Myers,A.J.,
            Faber,K.M., Foroud,T., Mayeux,R., Shen,L., Kim,S., Turk,M.,
            Hardy,J., Reiman,E.M. and Saykin,A.J.
  CONSRTM   Alzheimer's Disease Neuroimaging Initiative  and  NIA-LOAD/NCRAD
            Family Study Group
  TITLE     Analysis of copy number variation in Alzheimer's disease in a
            cohort of clinically characterized and neuropathologically verified
            individuals
  JOURNAL   PLoS One 7 (12), e50640 (2012)
   PUBMED   23227193
REFERENCE   2  (bases 1 to 1602)
  AUTHORS   Howe,M.L., Mehmud,Z.F., Saha,S., Buratovich,M., Stutius,E.A.,
            Schmidt,H.D., Lenon,A.L., Reddicks,C., Ivanov,G.S., Przyborski,S.A.
            and Ozer,J.S.
  TITLE     Transcription Factor IIA tau is associated with undifferentiated
            cells and its gene expression is repressed in primary neurons at
            the chromatin level in vivo
  JOURNAL   Stem Cells Dev 15 (2), 175-190 (2006)
   PUBMED   16646664
  REMARK    GeneRIF: TFIIA tau is associated with undifferentiated cells during
            development, yet is down-regulated at the chromatin level upon
            cellular differentiation.
REFERENCE   3  (bases 1 to 1602)
  AUTHORS   Catena,R., Argentini,M., Martianov,I., Parello,C., Brancorsini,S.,
            Parvinen,M., Sassone-Corsi,P. and Davidson,I.
  TITLE     Proteolytic cleavage of ALF into alpha- and beta-subunits that form
            homologous and heterologous complexes with somatic TFIIA and TRF2
            in male germ cells
  JOURNAL   FEBS Lett 579 (16), 3401-3410 (2005)
   PUBMED   15927180
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082104.1.
            
            On Feb 11, 2005 this sequence version replaced XM_237507.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082104.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1602
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..1602
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /note="general transcription factor 2A subunit 1 like"
                     /db_xref="GeneID:316711"
                     /db_xref="RGD:1308625"
     exon            1..36
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..1422
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /note="general transcription factor II A, 1-like factor;
                     general transcription factor IIA, 1-like"
                     /codon_start=1
                     /product="TFIIA-alpha and beta-like factor"
                     /protein_id="NP_001012136.1"
                     /db_xref="GeneID:316711"
                     /db_xref="RGD:1308625"
                     /translation="MAFVNLVPKLYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWE
                     TKVLQSKATEDFFRNSVQAPLFTLQLPHGLPPALQSTASLLIPAGRTLQSFTPEDLNA
                     SCAANFAFPGYPIHVPAGMALQTASGHLYKVNVPVVVTQTSGRAEILQHPFQQVLQQL
                     GQPSIIQTTVPTLHPCSLQAETEKSHRMETALQQPTVLHSTPVDRKHTENATSERRVL
                     PGNELRPQESTQYISLPGVGFPPQVALTESSLEPVLGASANLTQNLHGGPFTQGPPGT
                     LRHHVLDTQLHSLRDRIYGCDSVKQLRKIEEPSSLRVSEKSCTSERDLNIQVTDDDIN
                     EIIQIDGTGDNSSAEEGGSIRDADENEFPGIIEAGDLKVLEEEVDSVSNEDSTANSSD
                     NEDHQIDALEEDPLNSGDDVSEQDAPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVM
                     CFGGRDYVFAKAIGEAEW"
     exon            37..138
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            139..259
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            260..315
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            316..397
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            398..963
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1224
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1314
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1577
                     /gene="Gtf2a1l"
                     /gene_synonym="Gtf2a1lf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcagagcgg ccagcatggc cttcgtcaac ctggtgccca aactctaccg atctgtaatt
       61 gaagacgtaa tcgagggtgt gcgggacctc tttgctgagg aaggcatcga ggagcaggtg
      121 ttgaaagacc tgaagaagct ctgggaaacc aaagttttac aatctaaagc gacagaggac
      181 ttcttcagaa atagtgtgca ggcgcccctt ttcaccctcc agctgccaca tggcttaccg
      241 ccagcactgc aatcaacagc atcgttgctg atcccggctg gtagaaccct ccagagtttt
      301 acgccagaag acctgaatgc cagctgtgca gcaaacttcg cctttcctgg ctatccgatt
      361 cacgtcccag caggcatggc cctccagacg gcgtccggtc acctttacaa agtcaatgta
      421 ccagtcgtgg tgacacagac ttcagggaga gcagagattc tccagcatcc gtttcagcaa
      481 gtccttcagc agcttgggca gccttcaata atacagacca cggttccaac attgcaccca
      541 tgctctcttc aagccgaaac tgagaaatca cacagaatgg agactgcgct gcaacagcct
      601 accgttctgc attccactcc agtggacagg aaacacacag aaaatgctac cagcgagagg
      661 cgtgttctcc ctgggaatga gcttcggccg caggaaagca ctcagtacat cagccttcca
      721 ggtgtggggt ttcctcctca ggtcgctcta acagagtcta gcctggagcc agtgctcggt
      781 gcctcagcaa acctgactca gaatctacat ggtggtcctt tcacacaggg ccctccgggc
      841 actctccgcc accacgtgct tgacacacag cttcatagcc ttagagacag gatatatgga
      901 tgtgattctg taaagcaact gaggaaaata gaggagccca gcagcctccg tgtgtcagag
      961 aagagttgta cttctgagag ggatctgaat attcaggtaa ccgatgatga tattaatgaa
     1021 ataattcaaa tagatggaac cggcgataac tcttctgctg aagagggggg aagcataagg
     1081 gatgcagatg agaatgaatt tccagggatc attgaagccg gcgaccttaa ggtacttgag
     1141 gaagaagtgg acagcgtatc aaatgaagat tcaactgcaa acagcagtga caacgaggac
     1201 catcaaatag acgccctaga agaggatccc ctaaattctg gagatgatgt cagtgagcag
     1261 gacgcgccag acctgtttga cacagataat gtaattgtct gtcagtatga taagattcac
     1321 cggagtaaga acagatggaa attctacttg aaagatggag tcatgtgctt tggagggaga
     1381 gactatgtgt ttgcaaaggc cattggtgaa gccgagtggt gagcaccaga ggctcggtcc
     1441 atcagctctg tgaacccacg tgggactact atattgtatg tgtgacccac attcttattt
     1501 tatatgtggt ccatcgaaga atcgatttta cttttttgtt cactatatgg aattaaataa
     1561 agtatagttc aaatgcaaaa aaaaaaaaaa aaaaaaaaaa aa
//
