LOCUS       NM_001108846            1127 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus goosecoid homeobox 2 (Gsc2), mRNA.
ACCESSION   NM_001108846 XM_001062999 XM_344044
VERSION     NM_001108846.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Jolma,A., Yan,J., Whitington,T., Toivonen,J., Nitta,K.R.,
            Rastas,P., Morgunova,E., Enge,M., Taipale,M., Wei,G., Palin,K.,
            Vaquerizas,J.M., Vincentelli,R., Luscombe,N.M., Hughes,T.R.,
            Lemaire,P., Ukkonen,E., Kivioja,T. and Taipale,J.
  TITLE     DNA-binding specificities of human transcription factors
  JOURNAL   Cell 152 (1-2), 327-339 (2013)
   PUBMED   23332764
REFERENCE   2  (bases 1 to 1127)
  AUTHORS   Galili,N., Nayak,S., Epstein,J.A. and Buck,C.A.
  TITLE     Rnf4, a RING protein expressed in the developing nervous and
            reproductive systems, interacts with Gscl, a gene within the
            DiGeorge critical region
  JOURNAL   Dev Dyn 218 (1), 102-111 (2000)
   PUBMED   10822263
REFERENCE   3  (bases 1 to 1127)
  AUTHORS   Gottlieb,S., Hanes,S.D., Golden,J.A., Oakey,R.J. and Budarf,M.L.
  TITLE     Goosecoid-like, a gene deleted in DiGeorge and velocardiofacial
            syndromes, recognizes DNA with a bicoid-like specificity and is
            expressed in the developing mouse brain
  JOURNAL   Hum Mol Genet 7 (9), 1497-1505 (1998)
   PUBMED   9700206
REFERENCE   4  (bases 1 to 1127)
  AUTHORS   Galili,N., Epstein,J.A., Leconte,I., Nayak,S. and Buck,C.A.
  TITLE     Gscl, a gene within the minimal DiGeorge critical region, is
            expressed in primordial germ cells and the developing pons
  JOURNAL   Dev Dyn 212 (1), 86-93 (1998)
   PUBMED   9603426
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473999.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_344044.3, XM_001062999.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..1127
                     /gene="Gsc2"
                     /gene_synonym="Gscl"
                     /note="goosecoid homeobox 2"
                     /db_xref="GeneID:363831"
                     /db_xref="RGD:1305333"
     CDS             1..645
                     /gene="Gsc2"
                     /gene_synonym="Gscl"
                     /codon_start=1
                     /product="homeobox protein goosecoid-2"
                     /protein_id="NP_001102316.1"
                     /db_xref="GeneID:363831"
                     /db_xref="RGD:1305333"
                     /translation="MYILRLLRRPPAGMATAGSAASHRDPGRPCPFSIEHILSSLPER
                     RPVARPPQPVGGRNPAEPDEPEAPAPAAPCACCCCCNPRAAPRGTPETASGPGLRLGW
                     PLRLAPESPSPLTAPSTGSPALTGTSGPGPQRRTRRHRTIFSEEQLQALEALFVQNQY
                     PDVGTRERLAVRIRLREERVEVWFKNRRAKWRHQKRVSSSRLAPGSRKPHKESC"
     exon            1..289
                     /gene="Gsc2"
                     /gene_synonym="Gscl"
                     /inference="alignment:Splign:2.1.0"
     exon            290..543
                     /gene="Gsc2"
                     /gene_synonym="Gscl"
                     /inference="alignment:Splign:2.1.0"
     exon            544..1127
                     /gene="Gsc2"
                     /gene_synonym="Gscl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtatatat tgcgcctctt gcgccggccg cccgcgggca tggcgactgc aggcagcgcg
       61 gcgagccaca gggaccccgg gcgaccctgc cctttctcca tcgagcacat cctctctagt
      121 ctgcccgagc gcaggcccgt ggcgcggcca ccgcagcccg tcggtggtcg gaaccccgcc
      181 gagccagacg aacccgaggc cccggccccc gctgctccct gcgcctgctg ctgctgctgc
      241 aacccgcgcg ccgcgccccg cggaaccccg gagaccgcgt ccgggccggg cttgaggcta
      301 gggtggccac tgaggctggc gcccgagtcg ccctccccct tgacggcgcc gagcacagga
      361 tctccggcgc tgactggcac aagcggcccc ggcccgcagc ggcgcacgcg gcgccaccgt
      421 accatcttca gtgaggagca gctgcaggcg ctcgaggcac tcttcgtaca gaaccagtat
      481 cccgacgtag gcacgcgcga acgcttggca gtccgcatcc gcctgcggga ggagcgcgtg
      541 gaggtctggt tcaagaaccg cagggccaag tggcgacacc aaaagcgtgt ttcttcatcg
      601 aggctcgcgc ctgggtctag gaagccccac aaggagagtt gttgatggtg tccggagttt
      661 cttctggctt tggcggtgaa gtggagcaca aggaagtagg agggggacag acccacttga
      721 acaggaacta aagctgtcag tactgagaga cggggaatcc aaagccttct cacccatgaa
      781 gggaggggat gcggggcagg aaccagagac cccctgcagg taaagggcag acacagagca
      841 ggttaacttc ctcggccacc tagagaagcc acacaggata aagagcctcc ctccccacct
      901 catggcagtc ttcaagactg gcctcctctc tgtccttcca ccttcttatg caaggcagtg
      961 ctgtctgctc agttctgggc ttactctgtc ctcaaaggcc ctgcactggg ccctggtgtc
     1021 aggacctgtg gaagaaggtt atagttggta atttccagat ccctgcatct gagccttcct
     1081 ctcagccttg agctgatgcc aagacataaa cgagattaca aagacca
//
