LOCUS       NM_001170477            1245 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus growth hormone regulated TBC protein 1 (Grtp1),
            transcript variant 1, mRNA.
ACCESSION   NM_001170477
VERSION     NM_001170477.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 18, 2018 this sequence version replaced NM_001170477.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1089109.1,
                                           SRR23984936.264060.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               JAXUCZ010000016.1  83034966-83035089
            125-276             JAXUCZ010000016.1  83035370-83035521
            277-435             JAXUCZ010000016.1  83043609-83043767
            436-560             JAXUCZ010000016.1  83046113-83046237
            561-657             JAXUCZ010000016.1  83048676-83048772
            658-830             JAXUCZ010000016.1  83053706-83053878
            831-1016            JAXUCZ010000016.1  83053952-83054137
            1017-1245           JAXUCZ010000016.1  83056361-83056589
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.5"
     gene            1..1245
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /note="growth hormone regulated TBC protein 1"
                     /db_xref="GeneID:361180"
                     /db_xref="RGD:1309210"
     exon            1..124
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1106
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /note="isoform 1 is encoded by transcript variant 1; GH
                     regulated TBC protein 1"
                     /codon_start=1
                     /product="growth hormone-regulated TBC protein 1 isoform
                     1"
                     /protein_id="NP_001163948.1"
                     /db_xref="GeneID:361180"
                     /db_xref="RGD:1309210"
                     /translation="MDPAERAQAARARVPRIDPYGFERPEDFDYAAYEEFFSTYLVIL
                     TKRAIKWSKLLKGSGGVRKSVTVKRYVRKGIPLEHRARVWMAVSGAQAQMDQNPGYYH
                     RLLEGESSSRLEEAIRTDLNRTFPDNVMFRKTADPCLQKTLYNVLLAYGLHNQDVGYC
                     QGMNFIAGYLILITKNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKL
                     PAVAALMDGHGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLI
                     KQHQEFILEASSVPDICDKFKQITKGDFVTECHTFMQKIFSEPGSLSMATITRLRESC
                     RAALQAQS"
     exon            125..276
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            277..435
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            436..560
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            561..657
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            658..830
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            831..1016
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1245
                     /gene="Grtp1"
                     /gene_synonym="LRRGT00052"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggccagcg gcgcaccggg gtccagcgct tggggctgca ctggttcaga gtcccgcggt
       61 ccctggcggt tctccgcatg gatcccgcag agcgcgcgca ggcggcgcga gctcgggtac
      121 ccaggatcga tccgtatgga tttgaaaggc ccgaagactt tgattatgcg gcttatgaag
      181 aattcttttc cacgtacctg gtgatactca ctaagagggc gatcaaatgg tccaaacttc
      241 taaagggaag cggtggtgtc cgaaaaagcg tgacagtgaa gcgttatgtc cggaagggaa
      301 tcccactgga gcaccgggcc cgagtgtgga tggctgtgag tggagcccag gcccagatgg
      361 atcagaaccc tggatactac catcgactgc ttgagggaga gagcagttcc agactggagg
      421 aagccatcag gacagacttg aaccggacat tccctgacaa cgtgatgttc cggaagacgg
      481 cagatccttg tctccagaag accctgtaca acgtgctgct ggcgtatggg ctgcacaacc
      541 aagatgtggg gtactgccag gggatgaact tcatagctgg gtatctgatc cttatcacta
      601 agaatgaaga ggagtctttc tggcttttgg atgctcttgt tggaagaata ctgcctgatt
      661 actatagccc ggcaatgttg gggctgaaga ctgatcaaga ggtcctggca gagctggtga
      721 ggatgaagct accggcggtg gcagcactga tggatggcca tggtgtgttg tggactctgc
      781 tggtgtcccg ctggttcatc tgcctgtttg tggatattct ccctgtggag acggtgctac
      841 gaatctggga ctgtttgttc aacgaaggct ccaaaatcat attccgggtt gctctgacct
      901 taattaagca acatcaggaa tttatattgg aagccagcag tgttccagac atctgtgaca
      961 agttcaagca gatcaccaaa ggggactttg tgacagagtg tcacacgttc atgcagaaaa
     1021 tattttcaga accaggaagc ctgtccatgg cgaccatcac taggctccgg gaaagttgcc
     1081 gagctgcgct gcaggcacag agctgagtgc acaggctcgt accatccgct gctgcagttc
     1141 tcttccagag cacacacttc cccagttcct ctcacgttgt tcctcttgta aatacttgaa
     1201 atcgcgacac tcaatgtgaa cttttaaaag aatgatttaa agtta
//
