LOCUS       XM_039095358            2996 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glutamate ionotropic receptor kainate
            type subunit 5 (Grik5), transcript variant X4, mRNA.
ACCESSION   XM_039095358
VERSION     XM_039095358.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095358.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2996
                     /gene="Grik5"
                     /gene_synonym="GluK5; iGlu5"
                     /note="glutamate ionotropic receptor kainate type subunit
                     5; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 10 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 112
                     samples with support for all annotated introns"
                     /db_xref="GeneID:24407"
                     /db_xref="RGD:2735"
     CDS             193..2469
                     /gene="Grik5"
                     /gene_synonym="GluK5; iGlu5"
                     /codon_start=1
                     /product="glutamate receptor ionotropic, kainate 5 isoform
                     X4"
                     /protein_id="XP_038951286.1"
                     /db_xref="GeneID:24407"
                     /db_xref="RGD:2735"
                     /translation="MTLGVLKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILG
                     FSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRS
                     QEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSR
                     QGHREIGVWYSNRTLAMNATTLDINLSQTLANKTLVVTTILENPYVMRRPNFQALSGN
                     ERFEGFCVDMLRELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELINRQKADLAV
                     AAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYL
                     AVSCVLFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPR
                     ALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIHA
                     GSTMTFFQNSRYQTYQRMWNYMQSKQPSVFVKSTEEGIARVLNSRYAFLLESTMNEYH
                     RRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQENNRLEILKRKWWEGGR
                     CPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFIWSTRRSAESEEVSVCQEM
                     LQELRHAVSCRKTSRSRRRRRPGGPSRALLSLRAVREMRLSNGKLYSAGAGGDAGAHG
                     GPQRLLDDPGPPGGPRPQAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGTPAEATS
                     PPRPRPGPTGPRELTEHE"
ORIGIN      
        1 tcggctactc tgtctcattt gagccaagat cttccaaagt tgggcagtct ggccttaagc
       61 tcgctctgta gcccagacag gcttaagcta cttgagtagc tggaattaca ggcctgtgcc
      121 cctaggcccg gtagctgggt ttctttttga tggatgatca accagcctga gccctaaaca
      181 ttgacagtgc caatgacatt gggtgtctta aaggcttcgg agctgggaat gacctcagcg
      241 ttttacaagt acatcctcac caccatggac ttccccatcc tgcatctgga cggtatcgta
      301 gaggactcct ccaacatctt gggcttttcc atgttcaaca cctcccatcc cttctacccg
      361 gagtttgtgc gcagcctcaa catgtcctgg agggagaact gcgaagccag cacctaccct
      421 ggccctgcgc tgtcggcagc cctgatgttt gatgccgtgc atgtggtggt aagcgctgtc
      481 cgagagctga accggagcca ggagattggt gtcaagccac tggcttgcac ttcggccaac
      541 atctggcccc atgggaccag cctcatgaac tacctgcgca tggtagagta tgacgggctg
      601 actgggcggg ttgagttcaa cagcaaaggg cagaggacca actacacact gcgcatcctg
      661 gagaagtccc gccagggcca ccgtgagata ggggtgtggt actctaaccg gaccctggcc
      721 atgaatgcta ccaccctgga catcaacctg tcacagactc tagccaacaa gactctggtg
      781 gtcacaacaa tcctggagaa cccgtatgtc atgcgccggc ccaacttcca ggccctgtca
      841 gggaacgagc gctttgaggg cttctgcgtg gacatgcttc gggagctggc cgagctgctg
      901 cgcttccggt atcgcctgcg gttggtggag gacggactgt acggggcacc tgagcccaat
      961 ggttcctgga caggaatggt tggcgagctc atcaaccggc agaaggcaga cctggctgtg
     1021 gcagccttca ccatcaccgc ggagagagag aaggtcatcg acttctccaa gccattcatg
     1081 accctgggga tcagcatcct ctacagggtg cacatgggcc gcaagcctgg ctacttctcc
     1141 ttcctggacc ctttctcccc tgccgtgtgg ctcttcatgc ttcttgccta cctggctgtc
     1201 agctgtgtct tgtttctggc tgccaggctg agcccttatg agtggtataa ccctcacccg
     1261 tgtcttcggg cgcgtcccca tatcctggag aaccagtaca cgctgggtaa cagcctttgg
     1321 ttccctgtgg gtggcttcat gcagcagggc tcggagatca tgccccgggc gctgtccaca
     1381 cgctgtgtca gcggagtctg gtgggccttc accttgatca tcatctcctc ctacacggcc
     1441 aacctggctg ccttcctcac ggtgcagcgc atggaggtgc cggtggagtc tgcagacgac
     1501 ttggcggatc agaccaacat tgagtacggc actatccacg ctggctccac catgaccttc
     1561 tttcagaact cacggtacca gacgtaccag cggatgtgga attacatgca gtcgaagcag
     1621 cccagcgtgt tcgtcaagag cacagaggag gggatcgccc gtgtcctcaa ctcacgttac
     1681 gccttcctgc tggagtccac catgaacgag taccacaggc gcctcaattg caacctcacc
     1741 cagatcgggg gcctcctcga caccaagggc tacggcatcg gcatgccgct gggctcccca
     1801 ttccgggatg agatcacgct ggccatcctg cagctccagg agaacaacag gctggagatc
     1861 ctgaagcgca agtggtggga gggcggccgg tgccccaagg aggaggacca cagggccaaa
     1921 ggtttgggca tggagaacat tggcggtatt tttgtcgtgc tgatctgtgg cctcatcatt
     1981 gctgtcttcg tggcggtcat ggaattcatc tggtccacgc ggaggtcagc ggagtctgag
     2041 gaggtgtcgg tgtgccagga gatgctgcag gagctgcgcc acgccgtgtc ttgccgcaag
     2101 acctcgcgtt cccgccggcg ccggcgccct ggcggcccga gccgggccct gctgtcgctg
     2161 cgcgcggtcc gcgagatgcg actcagcaac ggcaagctct actcggccgg cgcgggcggg
     2221 gacgcgggcg cgcacggggg tccgcagcgc ctcctggacg accccgggcc tcctggggga
     2281 ccccggcccc aggctcccac gccctgcacg cacgtgcgcg tctgccagga gtgcaggcgc
     2341 atccaggcgc tgcgagcttc aggggccggg gcgcccccgc gtggcctggg cactccggcc
     2401 gaagccacca gcccgcctcg gccgcggcct ggacccactg gaccccgcga gctgactgag
     2461 catgaatgac cgtggacggg gccgggcgtg cgccccgact gactgcaggg acgcgatgcg
     2521 ccccaggcgg acaggacgcc gcgattttgc cttcagtttc tggtgaagtc caagcccggc
     2581 tccggagcag gcctgcgcct cctagtggac tccagcgagg gtgtcgcgga cgcccgcatt
     2641 ccatcccgcg ccgcgggcgg gaggagcgca gagaccgagg actcttaagg gccgtggact
     2701 gtgagggccg ctcctggcgt tggaaagcgg tccgcgggga ggaccccaac ctgggactgc
     2761 ccagatgtcc caagacttga cacggctctc cacacttctg gaggtcgaga gggcctctgg
     2821 acatgtgggt gtcccctggt gcccctctct tctttctctc ttttttgggg ggagaaacct
     2881 cagaatttct atgagacgcc cccaggagag ggtctcttgg gcccctatat ctccccctgc
     2941 cacatctcag accctgttgg aataaaaaaa gaacaaaacc ccaaaaactg gggata
//
