LOCUS       XM_234006               4464 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus grainyhead-like transcription factor 1
            (Grhl1), transcript variant X1, mRNA.
ACCESSION   XM_234006
VERSION     XM_234006.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_234006.11.
            
            On Jan 21, 2021 this sequence version replaced XM_234006.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4464
                     /gene="Grhl1"
                     /note="grainyhead-like transcription factor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 5 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313993"
                     /db_xref="RGD:1305735"
     CDS             105..1961
                     /gene="Grhl1"
                     /codon_start=1
                     /product="grainyhead-like protein 1 homolog"
                     /protein_id="XP_234006.5"
                     /db_xref="GeneID:313993"
                     /db_xref="RGD:1305735"
                     /translation="MTQEYDNKRPVLVLQNEALYPQRRSYTSEDEAWKSFLENPLTAA
                     TKAMMSINGDEDSAAALGLLYDYYKVPRERRSSAVKPEGEHPEPEHSKRNSIPNVTEQ
                     PLISAGENRVQVLKNVPFNIVLPHSNQLGIDKRGHLTAPDTTVTVSIATMPTHSIKTE
                     IQPHGFTVGIPPAVYHSEPTERVVVFDRSLSTDQFSSGPQPPNAQRRTPDSTFSETFK
                     EGVQEVFFPSELSLRMPGMTSEDYVFDSVSGNNFEYTLEASKSLRQKQGDSTMTYLNK
                     GQFYPVTLKEVSSNEGIHHPISKVRSVIMVVFAEDKSREDQLRHWKYWHSRQHTAKQR
                     CIDIADYKESFNTISNIEEIAYNAISFTWDINDEAKVFISVNCLSTDFSSQKGVKGLP
                     LNIQIDTYSYNNRSNKPVHRAYCQIKVFCDKGAERKIRDEERKQSKRKVSDVKVQLLP
                     SHKRTDITVFKPFLDLDTQPVLFIPDVHFTNLQRGSHVLSLPTEELEGDGSVLKRGPF
                     GTEDDFGVPPPAKLARTEEPKRVLLYVRKESEEVFDALMLKTPSLKGLMEAISDKYDV
                     PHDKIGKIFKKCKKGILVNMDDNIVKHYSNEDTFQLQIEEAGGSYKLTLTEI"
ORIGIN      
        1 ccgccgcacg ccgcccgccg ccgcctcctc cccccggatc gggtgtactg tcccaacccg
       61 aaagtccagt tctgcggccc ggcagcggcg agcgagtgag cgcgatgaca caggagtacg
      121 acaacaaaag gccagtgctg gttcttcaga atgaagccct ttacccccag cggcgctcct
      181 acaccagtga ggacgaagcc tggaagtcgt tcctggaaaa ccctctcacg gcagccacca
      241 aagccatgat gagcatcaat ggagacgaag acagcgccgc tgccctgggc ctgctctatg
      301 actactacaa ggttcccaga gagcgcagat catcggctgt aaagcctgag ggagagcacc
      361 cagaaccaga gcacagcaaa agaaacagca taccaaatgt gacggagcag cccctcattt
      421 ctgctggaga aaacagggtg caagtgctga aaaatgtacc cttcaacatc gttctccccc
      481 atagcaacca gctgggcatt gataagagag gccatctgac agctcctgat actacagtca
      541 ctgtctccat agcgaccatg cctacccact ccatcaagac agaaatccag ccgcacggct
      601 tcactgtggg aatcccccca gcagtgtacc actcggaacc caccgagcgc gtggtggttt
      661 ttgaccggag cctcagcact gaccagttca gctctggccc acaacctccc aacgctcagc
      721 ggaggactcc ggactccacc ttctctgaga ccttcaagga gggcgttcag gaggttttct
      781 tcccctcgga gctcagtctt cggatgccgg gcatgacttc agaggactat gtgtttgaca
      841 gtgtttctgg gaacaacttt gagtataccc tagaagcctc aaagtcactt cggcagaagc
      901 aaggggacag caccatgaca tacctgaaca aaggccagtt ctatcctgtc accctaaagg
      961 aagtgagcag caatgaaggg atccaccacc ctatcagcaa agttcgaagt gtgatcatgg
     1021 tggtttttgc tgaagacaaa agcagggaag accagctaag gcactggaag tactggcact
     1081 cccgtcagca cacggccaag cagaggtgca ttgacattgc tgactacaaa gaaagcttca
     1141 acaccatcag caacattgag gagatcgcct ataacgccat ttccttcacc tgggacatca
     1201 acgatgaggc gaaggtcttc atctctgtga actgcttgag cacagatttc tcttctcaga
     1261 agggtgtaaa gggcttgccg ctgaacatcc aaattgacac gtatagctat aacaaccgta
     1321 gcaacaagcc agtacaccgg gcctactgcc agataaaggt cttctgcgac aagggagctg
     1381 aacggaaaat tcgggatgaa gaacgaaaac agagcaagag aaaagtttct gacgttaaag
     1441 tgcagctcct tccctcacac aaacggacgg acatcacagt gttcaagcct ttcctggatc
     1501 tcgacactca gcctgtcctc ttcattcctg acgtgcattt taccaacctg cagcggggaa
     1561 gtcatgttct ttccctcccc actgaagaac tggaaggtga cgggtctgtc ttgaaaaggg
     1621 gaccatttgg aactgaagat gactttggag ttcctccgcc tgctaagctg gctcggacag
     1681 aagaaccgaa gagagtgctg ctctatgtcc gaaaggaatc agaagaagtc ttcgatgccc
     1741 tgatgctcaa gaccccatct ttgaagggct tgatggaggc aatctcagac aagtatgatg
     1801 tcccccatga caagattggg aaaatattta agaagtgcaa aaaggggatc ctggtgaaca
     1861 tggacgacaa tattgtaaaa cactactcca atgaggacac cttccagctg cagatcgaag
     1921 aagccggcgg atcatacaag ctcaccctga cagagattta aggtgggggc gctcagcccc
     1981 caggcgtagg gattcagtga aagggttcca tagatctata gttggccagc agaggagccc
     2041 aggcacctac cctgcagaac cttaaatatc agggaaggaa cctttcacgt aggaagggca
     2101 ctgtgtatat catgctgtgt tgatgttttc cttgtgatag aaatctatgt gttgttgttg
     2161 ttgttgttgt ttgaatttct gatgtgctta gagagtgaag catgaggact ttgcaccgga
     2221 tctaacagac cgtgggttat ctgctatacc acttgtcaag atctgcccgt gtccatggag
     2281 cagtggctgc tggctggcaa gagatgggaa ggcagtagct tgtctttgag gattttgtgt
     2341 tctcgatgac ctcagtctaa ttgtgactgc cttgaggagt gggcccagcc ctcagtgata
     2401 aagggctgag ccctctccct ccacctctcc tcctccagtg tttactgaat agggtgcatt
     2461 actggaacct tcccttgcaa cttccttgga catattgact gcctttctga tgaagaactt
     2521 acatgagcga cagtgtgaag ttagtttagt ggaagctgtg ttgtatataa gtgcaatatt
     2581 gttttgaagg tctgtaaatg tgtacatata tgtctgatat aaatatataa tatatgaata
     2641 cggtgtctgt gtacagatag tgaaggtgag caggaagatc taccttgaaa accctcttaa
     2701 agaagaggtt aagttatttt ccataacatg gaccaagcag gtagaatgct atttccccaa
     2761 acactagcaa gtgttcccta gcatagcaaa aagccatctc atgtggcaga gccatctgct
     2821 cttgcgaatg ttgtcactgt gtgggtttct gcaccctgag tggagataat ggaaggctgg
     2881 actgcagcca ctgtatgagg tgtgtgtgca ggtgtcagcc agctgtgccc atgtgagtca
     2941 cagctgtcgc catgagccag cgatgcaaac caagatgggc agattctcta agtgctgtgt
     3001 ttcagagctt ccaagcgtca agcattcatg aatttacaat tctgtggcag gggaatcttt
     3061 agtgcatact taaatattta aaaacaaaac aaaactttac attgtaactt tataatgaat
     3121 cctgtaacag aaatacaact gcgggtttct ttaggttcag ggaactagaa taggtcattt
     3181 gtgcgagcag gattgttagc agtagactta gcttcctgat gaagtatgtg aacaaaatag
     3241 ctggttttct aagatacggg atacgggtca tataacaata ttttatattt tgttttatga
     3301 aatcagtttt attgttttaa ttgtatcatt gaacatgtgt tttaaaccaa aggaattgaa
     3361 ttttataagt ctatttcaca agatgtcagc ttctgttatt cagcctaatt catttactca
     3421 tccctttcct ttgcctcggc tgacccagaa cttgctatgt agaccagaca gcctcagact
     3481 caagagttct gctccccaag tgcagggatt gaaggcatgc cccactactc acagcatcac
     3541 ttttaaagct cagactgact gaattcataa accttcctca gccaccccag cactggaatt
     3601 acatgcgtac acaccatgtg cttttaatga ataagatgca gttaatgaag tcatctggcc
     3661 taggagagtt cctgtgactt ctgagcattt tcccgactac attcttaggc ccgagatgca
     3721 gcctgtgccc tcagcctggg ctactgatgg ctcagcggct taggtccagc ttgaggatcg
     3781 cttcctccca gctcccagtg ctgacactgg ctcaactcac tggactctga ccttggaacc
     3841 tggcattgtc cgagaggcag cttccctagc cagcatcagt tacctggtag acactcgaga
     3901 aacttatgac ttccccacct ttagccaacc caggcagttt tgaggacttt gtggaatttc
     3961 taagcccaga aatgaatctg ggtaggtctt ggaccacgtg gctcagggta aaaactgtcg
     4021 agtgaacagc aatgatttaa gcagggaatg gtggtttcaa ggagcaagag accctggtgg
     4081 gagggtgtgg catcgtagag gaaggctgag tatgtctcag catttggaca gctacctgtg
     4141 ccttggcagt gttgaaagag gtatggtgtt tgtttctgtg actccatgtg ctccaggaaa
     4201 gagctatgtg acatcatccc atgttggcaa tcacatccca cctgaggtca ccagcggtgc
     4261 agacaggctt tgattactga cacctcctgg gggttagacc tggtgctcag aggggatcct
     4321 aggttgtgct caggtctcct gtcttaagca tatgactcct gatcttgaac tctaagcact
     4381 tgatccctgg tcccaaactc atgtaactac tatgtgcttc aaatctctgg atcaaataca
     4441 aatgtaacat caaaaaaaaa aaaa
//
