LOCUS       XM_039085059            2036 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus G protein pathway suppressor 1 (Gps1),
            transcript variant X4, mRNA.
ACCESSION   XM_039085059
VERSION     XM_039085059.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2036
                     /gene="Gps1"
                     /gene_synonym="MFH"
                     /note="G protein pathway suppressor 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 33 ESTs, 3 long SRA reads, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     197 samples with support for all annotated introns"
                     /db_xref="GeneID:117039"
                     /db_xref="RGD:621532"
     CDS             155..1645
                     /gene="Gps1"
                     /gene_synonym="MFH"
                     /codon_start=1
                     /product="COP9 signalosome complex subunit 1 isoform X4"
                     /protein_id="XP_038940987.1"
                     /db_xref="GeneID:117039"
                     /db_xref="RGD:621532"
                     /translation="MRGSPAPSSASSSASDLSRSPAHSRSDLRPGTSGDYSLSASLSA
                     CTLLSEGAVEPMQIDVDPQEDPQNAPDVNYVVENPTLRTFNVDMYEEIHRKLSEATRE
                     LQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKGNSIKESIRRGHD
                     DLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQNWSHVLSYVSK
                     AESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPE
                     LLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYAS
                     CLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVA
                     ALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMGKEFQRRAKAMILR
                     AAVLRNQIHVKVNSLGCEGMGSTHTASTEPLPVHCSLLLEKGAKGS"
ORIGIN      
        1 gcgagcgggg cggggcccgc agctctggcc tgggcgcgtg agcgtcgcct gcctcgcggg
       61 ccgctctggg ccccggcccc cgccccgccc ccgcctcgcg cgccaacgct tttcgtgcgg
      121 gtgctggcct ctcagagagg tgcgtcaggc caagatgcgg ggcagcccgg cgcccagctc
      181 tgcctcgtcg tcggcctccg acttgagccg cagccctgcg cacagcaggt cagacttgcg
      241 gcccggcacg tcgggcgact acagcctgag cgccagcctg tcggcctgca cgctactttc
      301 cgagggggcc gtggaaccca tgcagattga tgtagatccg caggaagatc cccagaacgc
      361 acctgatgtc aactacgtgg tggagaaccc caccctgagg accttcaatg tggacatgta
      421 tgaagagata caccggaagc tctctgaggc taccagggag ctgcagaatg cacctgatgc
      481 catccctgag agtggagtgg agcccccacc cctggacaca gcctgggtgg aggccactcg
      541 gaagaaggcc ctgttgaaac tggagaagtt agacacggac ttgaagaact acaagggcaa
      601 ttctatcaag gagagcatca ggcgcggcca tgatgacctg ggtgaccact acctggactg
      661 tggggacctc agcaatgccc tcaagtgtta ttcgcgagcc cgagactact gcaccagtgc
      721 taagcatgtc atcaacatgt gcctcaatgt catcaaggtc agtgtctact tgcagaattg
      781 gtctcatgtg ttaagctatg tcagcaaggc tgagtctact ccagagattg ctgagcagcg
      841 gggagagcgg gacagccaga ctcaagccat cctcaccaag ctcaagtgtg ctgcaggctt
      901 ggctgagctg gctgcacgaa agtataagca agctgccaag tgcttccttc tggcttcctt
      961 tgatcactgt gatttcccag agctgctgtc ccccagcaat gtggctgtct atggtggcct
     1021 atgtgcctta gccacctttg accggcagga gctgcaacgc aatgtcatct ccagcagctc
     1081 cttcaagttg ttcctggagc tggagccaca ggtcagagac atcatcttca aattttatga
     1141 gtccaagtat gcctcatgct tgaagatgtt ggacgagatg aaggacaacc tgctcctgga
     1201 catgtacctg gcccctcacg tcaggacact gtatacccag atccgtaacc gggctctcat
     1261 ccaatacttc agcccctatg tgtcagctga tatgcacaag atggctgctg ccttcaacac
     1321 aacagttgca gctctggagg atgagctcac acagctcatc ctggagggcc ttattaatgc
     1381 ccgcatcgac tcacacagca agatactgta tgctcgagac gtggatcagc gtagcaccac
     1441 ctttgagaag tccctgctga tgggcaagga gttccaacga cgggccaaag ccatgattct
     1501 gagagcagct gtgctacgca accagatcca tgtcaaggtg aacagcctgg ggtgcgaggg
     1561 aatgggcagc actcacacag cctccactga acccctccct gtccactgca gtctcctcct
     1621 agagaaggga gccaagggga gctgactcca gcaaacagcc agtcacggat gagcaccaac
     1681 atgtgaaagg cattcccgtg accttcagac tagtctgcac agctcctctg ccagtggaag
     1741 cagcacctgg gcctcctgcc tgctttcctc aagatgagac cccagactgt gtggttcatt
     1801 agagcagtcc agcccctggg atgccagttc attggccttc cgctcggagg ccccctctgc
     1861 tgtggtaggc aggctgccca gtatggccat tcgggcctga ctctaggttt ctgtcccaat
     1921 gaaacagacc atgtgcaatt cccaggtaag ggttcctcaa cccttcctgt ccatgtagtt
     1981 ctgactgcag cagtgtcact aaccaagtag tccattaaag tacagattga tcattg
//
