LOCUS       XM_039104332            5546 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glycerol-3-phosphate dehydrogenase 2
            (Gpd2), transcript variant X4, mRNA.
ACCESSION   XM_039104332
VERSION     XM_039104332.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5546
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5546
                     /gene="Gpd2"
                     /gene_synonym="mtGPDH"
                     /note="glycerol-3-phosphate dehydrogenase 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 35 ESTs, 3 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 58 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25062"
                     /db_xref="RGD:2726"
     CDS             28..2211
                     /gene="Gpd2"
                     /gene_synonym="mtGPDH"
                     /codon_start=1
                     /product="glycerol-3-phosphate dehydrogenase,
                     mitochondrial isoform X1"
                     /protein_id="XP_038960260.1"
                     /db_xref="GeneID:25062"
                     /db_xref="RGD:2726"
                     /translation="MAFQKVVKGTILMGGGALATVLGLSQFAHYRRKQVSLAYVEAAT
                     CFSEPVNREPPSREAQLMTLQNTSEFDILVIGGGATGCGCALDAVTRGLKTALVERND
                     FASGTSSRSTKLIHGGVRYLQKAITNLDVEQYRMVKEALHERANLLEIAPHLSAPLPI
                     MLPLYKWWQLPYYWVGIKMYDLVAGSHCLKSSYVLSKSRALEHFPMLQKDKLVGAIVY
                     YDGQHNDARMNLAIALTAARYGAATANYMEVVSLLKKTDPETGKERVSGARCKDVLTG
                     HEFNVRAKCVINATGPFTDSVRKMDDNDVVPICQPSAGVHIVMPGYYSPENMGLLDPA
                     TSDGRVIFFLPWEKMTIAGTTDSPTDVTHHPIPSEDDINFILNEVRNYLSCDVEVRRG
                     DVLAAWSGIRPLVTDPKSANTQSISRNHVVEVSDSGLITIAGGKWTTYRSMAEDTVNK
                     AVKLHNLNAGPSRTVGLFLQGGKDWSPTLYIRLVQDYGLESEVAQHLAKTYGDKAFDV
                     AKMASVTGKRWPVVGVRLVSEFPYIEAEVKYGIKEYACTAVDMISRRTRLAFLNVQAA
                     EEALPKIVELMGRELNWSELRKQEELETATRFLYYEMGYKSRTEQLTDSTEISLLPPD
                     IDRYKKRFHMFDEDEKGFITIVDVQRVLESINVQMDEDTLHEILCEVDLNKNGQVELH
                     EFLQLMSAVHTGRVSGSRLAILMKTAEENLDRRVPIPVDRSCGGL"
ORIGIN      
        1 tccggggaac tgatctcagg ctgagcaatg gcgtttcaaa aggtagtgaa agggactatt
       61 cttatgggtg gaggagctct ggccactgtt ttgggactct ctcagtttgc tcactacaga
      121 aggaagcaag taagcctggc gtatgtggaa gcagcaacat gcttctcaga gcccgtgaac
      181 agggagcctc cttccagaga agctcagctc atgactctgc agaacacatc ggaatttgac
      241 atcctcgtca ttggaggagg agccacagga tgtggctgtg cgctagacgc cgtcaccaga
      301 ggactgaaaa cagcccttgt agagagaaat gacttcgcat cagggactag cagcagaagc
      361 actaaattga tccatggtgg cgtacgatac ctccagaagg ctatcacgaa cttggatgtt
      421 gaacagtata ggatggtgaa agaggccctt catgaacgtg ccaacttact agaaatcgct
      481 ccccatctat cagctccgct gcctataatg ctgccacttt ataagtggtg gcagttacct
      541 tattactggg tgggaatcaa gatgtatgat ctggttgcag gaagtcattg cctgaagagc
      601 agttatgtcc tcagtaaatc cagagccctt gagcatttcc ccatgctcca gaaggacaag
      661 ctggtcggag ccattgtcta ctatgatgga cagcacaatg acgcccggat gaacctcgcc
      721 atcgccctca ccgctgccag gtacggggct gccacggcca attacatgga ggtggtgagc
      781 ttgctcaaga agacagaccc cgaaactggg aaagagcgcg tgagtggtgc ccggtgcaag
      841 gacgtgctca cagggcatga gtttaacgtg agagctaaat gcgttatcaa tgccaccggc
      901 cctttcacag actccgtgcg caaaatggat gataacgatg ttgttcccat ctgccagccc
      961 agtgcagggg ttcacattgt gatgcccggg tactacagcc ccgagaacat gggacttctt
     1021 gatcctgcaa ccagtgatgg cagagttatt ttcttcttgc cttgggagaa gatgacaatt
     1081 gcgggtacca ctgattcgcc aacggacgtc acgcaccatc ctattccttc ggaagacgac
     1141 attaacttca tcttaaatga agtgcggaac tacctgagtt gcgacgttga agtgagaaga
     1201 ggggatgtcc tggcagcgtg gagtggcatt cgcccgcttg ttaccgatcc caagtctgca
     1261 aacactcagt ccatctctcg aaatcatgtt gtggaagtca gcgacagtgg cctcatcaca
     1321 atagcaggtg ggaagtggac cacatatcgc tccatggcag aagatactgt gaacaaagct
     1381 gtcaagcttc acaacttgaa tgcaggaccc agtaggaccg ttgggctctt ccttcaagga
     1441 ggcaaagatt ggagccccac actctacatc aggcttgtcc aggactatgg gcttgagagt
     1501 gaggttgcac aacacctggc caaaacctat ggtgacaagg ctttcgacgt ggccaaaatg
     1561 gcaagtgtga ctggaaaacg gtggcctgtt gttggagtgc gtcttgtgtc agaatttccg
     1621 tacatcgaag cagaggtgaa atatgggatt aaggagtacg catgcaccgc tgttgacatg
     1681 atttcacgtc gcacccgcct ggcctttctt aatgttcagg ctgcagagga agccctgccc
     1741 aagattgttg agttaatggg aagagaattg aactggagtg aattgaggaa acaggaagaa
     1801 cttgaaacag ccacgaggtt tctgtactat gaaatgggct ataagtctcg aacagaacaa
     1861 ctcacagata gtactgaaat cagcctgctg cctccagaca tcgatcggta caagaagaga
     1921 tttcacatgt ttgatgaaga cgaaaaaggc ttcattacca ttgttgatgt tcaacgtgtg
     1981 ctagagagta tcaatgtaca aatggacgaa gacacactac atgaaattct ctgtgaagta
     2041 gacttgaaca agaatggtca ggttgagctc catgagtttc tgcagctgat gagcgcagtt
     2101 catacaggaa gggtgtctgg aagccggctt gccatcctca tgaagactgc cgaggagaac
     2161 ttggaccgta gagttccaat ccccgtggat cgtagttgtg gaggattgtg agtctgacca
     2221 ataaatccac aaccaacaag cctaggacag tcagcactat gtacaaccag agacgactta
     2281 aaccactcta aaatagtggc cattgtagct gccttttttt tttttttttt ttaaaaaaaa
     2341 aaaaaaacaa aaaaaggaaa aaaaacaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaagg
     2401 aaaaggaata agcaagcaaa caaacaaaaa cactggaaaa cattccaaaa ctttaaagat
     2461 gttggtgtgc tcgccaacac attttgccaa tactttattt gtatctgcca tgaagtctag
     2521 cttcaacaaa gagctttttt ttttttttag tgcacattga tttaatgttt tgtatccatt
     2581 tttgtaacct gtcagacttg acactctgcc tgtccattca ttcattcatt caaacaagtt
     2641 ttagaggcag actccctata gatcggaaag attttgcgag cgcccaaacg gtcaggagcc
     2701 ggagctcgta gacaacgttt tttttttttt tttctaaaaa atcatttgac ctcttaacgt
     2761 gataatgttt tggggagact tctcaaccct gtcttgctac ccaacccctt acaattaaca
     2821 ccgtatactt ttctgtctgg agtaactctg gctaatctgg agagggaaga caaagtttag
     2881 atctggttga gatttggtta cgtttctaaa agaagaactc cgaaagcttc cagacttgca
     2941 ggcgtaagat aaagacagcg ttgacatttg ccgggaggta cggcgatagc tgcttctcag
     3001 ctatcatttt tccccctagg cactgctggc tttctttgac tattatagtt gccagaaaaa
     3061 tccttgcttt ttttactttg aaaccagcat ttgaatggca agttggatat aatgggatga
     3121 gaccaaatct ttccattcct cacgggagta atgatagaac acaatttcca atcccacaag
     3181 tgccgaatct tgcagcctgt ggtgttgtca ggcctgttct tgtcgggggt gggcagtagt
     3241 ggtggcattt gcaaagagct aataaaaacg aattgggcag acttccgtta actttaatta
     3301 tgaaattaaa ataaggaatg ccacttttat attggaagct ggtctgtttg ccaaaggtct
     3361 ttctctttga gtactcaatg ggaaaattct ctttctaaca aaaaataaaa taaattaaaa
     3421 atcaaagaaa gacattagac acacacacac acacacacac acacacacac acacacaaat
     3481 caaacccaaa agtcagtgcc cattgaactc aacagatagt gcacagaaca gaggtacctt
     3541 gccagttgga agatgttttt gttatagtct gttggcgtta taactaatag tcttagtact
     3601 tactaattgg cctcccatct ctgaagctac caacagttag cttcctgtgc atagtaggac
     3661 gtgtagctct tcgttcacac ttctctcctg tcgttcacac ttttctcctg gcagcctttg
     3721 ttgcacagac cacgtcctag ccttgtgaac tggtacataa accacctttg tgctactgtt
     3781 ccgcttatgc acacattgtg tctttctgcc tcattcattc tgggtcatga atatcatatc
     3841 atataatgta agctgggagg ttctcagtcc ccgcctcaca ccctccccct cccccacccc
     3901 cacgccctcc ccatcccata cccctgaaat atgcagagag actgcaggga gagacactca
     3961 actcgttatt aaatgaagta tagatgcttc cacttctgtg tcagggaaac ctaagtgatg
     4021 tcacagcagg tgtcactgtg aattcttttc tttccaagtg tcaatttttt acactggttt
     4081 gtattttttt ttttaaatag atggaagcat gtggctttgc aatttagtgg gatttttttt
     4141 ttctatcatg acaataaagt tcactttata cctcgtgaca gtcaagtcgg cagaaaagct
     4201 atcctttaag acatcccttt aagatctgtg cagatatatc acaatattct acatcgctac
     4261 ttcctctctc tttctctctc tttctagtta gatcaagata acggtggctt gtgtcatccc
     4321 tgattctctt acagtaggga ctgggctcag aatgtgactt gattaggctg atctgcactt
     4381 ggaaagcagg tcttgtctgt atatgccttg ctctgaacga agttccctta aggacaaagg
     4441 gaagcgcact gtgcttcgtt tgagcttctc tgcctgggct tggtatctgc tcattctaaa
     4501 acacgctcct tcaccagtcc ctgagactct cggaaacgag ctccttttta atcacactcc
     4561 tatgagtaaa gcaccccaga atttctctat gagttcccaa tgaaacctgt acaggttttt
     4621 aaattttaaa tccaatttaa gccaagagga ggaaggaact caggggaaga agccccttca
     4681 gaaactcctc cagagaataa accgtgtttg tcttttccca taaaactgct atttgttgat
     4741 tttgtttggc tgtgggaggg ggtgagagga gatcaccttt tatcatcagg tgatttattt
     4801 cctcctgacg ggattcaggt gaaggaagcc catctgttct ggagagctgt gtatgccttt
     4861 aactagcctc cgtcccattg cttgaacagt cattactggc ttagctacgg ttgctgcctc
     4921 agtcatcatg ctgcatattc ctgctttccc gtatgttcat actgagtgtg acaccggatc
     4981 tctgctctcg ggtgcatgct tcgtactctg cctcagctta tgccttgatt tttgtccatt
     5041 tcaaaatacg cgcaacaaaa aatgttcatt ctgattttaa ctcagttcag cagagaggtt
     5101 gtcattgacc tttcccccct ctttccctct tttttatccg taaaggtctt tttacatatg
     5161 aatgtaatca cgtccatgac accaatgctg taaactctgc actgcagttt actctaagga
     5221 gtgaaaaagc cctactgtgt tttaaaagaa tcccctctct tagtccagtc ctggagtgga
     5281 tgcacgtgct gcacgctctc tcactcgcac agtttttatg tattgtgttg ggttatcgtt
     5341 ctagactgga ctgttaaatg ctgtctgtga ggctggactg tcatttttat aactgtcttc
     5401 gtattttatc gccattattt attacttttg atatacagaa tgagccgcat gcatttatag
     5461 agcaataaga agatgtattt aatgtgcctt gtttttaact gagtaagagc tgaaagcatg
     5521 aatcaataaa actgattaaa gtggtc
//
