LOCUS       NM_198779               3209 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus glycerophosphocholine phosphodiesterase 1
            (Gpcpd1), mRNA.
ACCESSION   NM_198779 XM_342523
VERSION     NM_198779.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3209)
  AUTHORS   Okazaki,Y., Ohshima,N., Yoshizawa,I., Kamei,Y., Mariggio,S.,
            Okamoto,K., Maeda,M., Nogusa,Y., Fujioka,Y., Izumi,T., Ogawa,Y.,
            Shiro,Y., Wada,M., Kato,N., Corda,D. and Yanaka,N.
  TITLE     A novel glycerophosphodiester phosphodiesterase, GDE5, controls
            skeletal muscle development via a non-enzymatic mechanism
  JOURNAL   J Biol Chem 285 (36), 27652-27663 (2010)
   PUBMED   20576599
REFERENCE   2  (bases 1 to 3209)
  AUTHORS   Li,J.Y., Boado,R.J. and Pardridge,W.M.
  TITLE     Blood-brain barrier genomics
  JOURNAL   J Cereb Blood Flow Metab 21 (1), 61-68 (2001)
   PUBMED   11149669
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 27, 2020 this sequence version replaced NM_198779.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY233980.1, SRR26643293.19043.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000003.1  140285271-140285345 c
            76-147              JAXUCZ010000003.1  140279412-140279483 c
            148-241             JAXUCZ010000003.1  140275487-140275580 c
            242-323             JAXUCZ010000003.1  140272607-140272688 c
            324-399             JAXUCZ010000003.1  140266739-140266814 c
            400-441             JAXUCZ010000003.1  140265073-140265114 c
            442-565             JAXUCZ010000003.1  140262633-140262756 c
            566-803             JAXUCZ010000003.1  140259231-140259468 c
            804-966             JAXUCZ010000003.1  140257932-140258094 c
            967-1099            JAXUCZ010000003.1  140257505-140257637 c
            1100-1154           JAXUCZ010000003.1  140256106-140256160 c
            1155-1247           JAXUCZ010000003.1  140254059-140254151 c
            1248-1325           JAXUCZ010000003.1  140252065-140252142 c
            1326-1365           JAXUCZ010000003.1  140251602-140251641 c
            1366-1427           JAXUCZ010000003.1  140250114-140250175 c
            1428-1493           JAXUCZ010000003.1  140249121-140249186 c
            1494-1630           JAXUCZ010000003.1  140246746-140246882 c
            1631-1766           JAXUCZ010000003.1  140246204-140246339 c
            1767-1927           JAXUCZ010000003.1  140245527-140245687 c
            1928-3209           JAXUCZ010000003.1  140240891-140242172 c
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..3209
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /note="glycerophosphocholine phosphodiesterase 1"
                     /db_xref="GeneID:362219"
                     /db_xref="RGD:735140"
     exon            1..75
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            76..147
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..2117
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /EC_number="3.1.4.2"
                     /note="preimplantation protein 4; putative
                     glycerophosphodiester phosphodiesterase 5; putative
                     glycerophosphocholine phosphodiesterase GPCPD1;
                     hypothetical protein LK44; glycerophosphocholine
                     phosphodiesterase GDE1 homolog"
                     /codon_start=1
                     /product="glycerophosphocholine phosphodiesterase GPCPD1"
                     /protein_id="NP_942074.1"
                     /db_xref="GeneID:362219"
                     /db_xref="RGD:735140"
                     /translation="MTPSQVTFEIRGTLLPGEVFAMCGNCDALGNWSPQNAVPLTESE
                     TGESVWKAVIVLSRGMSVKYRYFRGCFLEPKTIGGPCQVIVHKWETHLQPRSITPLEN
                     EIIIDDGQFGIHNGVETLDSGWLTCQTEIRLRLHFSEKPPVSITKKKFKKSRFRVKLT
                     LEGLEEDDDDDDKASPTVLHKMSNSLEISLISDNEFKCRHSQPECGYGLQPDRWTEYS
                     IQTMEPDNLELIFDFFEEDLSEHVVQGDVLPGHVGTACLLSSTIAESERSAGILTLPI
                     MSRSSRKTIGKVRVDFIIIKPLPGYSCSMQSSFSKYWKPRIPLDVGHRGAGNSTTTAK
                     LAKVQENTIASLRNAASHGAAFVEFDVHLSKDLVPVVYHDLTCCLTMKRKYEADPVEL
                     FEIPVKELTFDQLQLLKLSHVTALKTKDQKQCMAEEENSFSENQPFPSLKMVLESLPE
                     NVGFNIEIKWICQHRDGVWDGNLSTYFDMNAFLDIILKTVLENSGKRRIVFSSFDADI
                     CTMVRQKQNKYPILFLTQGKSDIYPELMDLRSRTTPIAMSFAQFENILGINAHTEDLL
                     RNPSYVQEAKDKGLVIFCWGDDTNDPENRRKLKEFGVNGLIYDRIYDWMPEQPNIFQV
                     EQLERLKRELPELKNCLCPTVSHFIPPSFCMESKIHVDANGIDNVENA"
     exon            148..241
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            242..323
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            324..399
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            400..441
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            442..565
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            566..803
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            804..966
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1099
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1154
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1247
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1325
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1326..1365
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1366..1427
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1493
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1630
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1631..1766
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1927
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..3209
                     /gene="Gpcpd1"
                     /gene_synonym="Gde5; Prei4; RGD735140"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctggcgag gcgcagactc tcggcttagt cggccgcggc ccaggctccc ggcgcggcgc
       61 ggaacggagt ggcagaaatc ttaaataatt ccatcagaat gacaccttct caggtcacct
      121 ttgaaataag aggaactctt ttaccaggag aggtctttgc aatgtgtgga aactgtgatg
      181 ccttgggaaa ctggagtcct caaaatgctg tgcctcttac tgagagtgag acaggcgaaa
      241 gtgtatggaa agcagtgatt gttcttagta gaggaatgtc cgtgaagtac cgctacttca
      301 gaggctgctt tttagaacca aagactatcg gtggtccatg tcaagtcata gttcacaagt
      361 gggagactca tctacaacca cgatcaataa cccctttaga aaacgaaatc attattgacg
      421 atggacaatt tggaatccac aatggtgttg aaacactgga ttctggatgg cttacctgtc
      481 agactgaaat aagactgcgt ctgcattttt ctgagaaacc tcctgtttca attaccaaga
      541 aaaagttcaa aaaatctaga tttagggtaa agcttacact agagggtctg gaggaagatg
      601 atgacgacga tgataaggca tctcccactg ttcttcacaa gatgtccaat agcctggaga
      661 tatccttaat aagtgacaat gagttcaagt gcaggcactc acagccagaa tgtgggtatg
      721 gcttacagcc tgaccgctgg acagagtaca gcatacagac aatggagccg gacaaccttg
      781 aactcatctt tgactttttt gaggaagatc tcagtgagca tgtagtccag ggtgatgttc
      841 ttcctggaca tgtgggcaca gcatgcctcc tgtcatctac cattgctgag agtgagagaa
      901 gcgctggaat ccttactctt cccatcatga gcagaagttc cagaaaaact ataggcaaag
      961 tcagagttga ttttatcatc atcaagccat taccaggata tagttgttct atgcagtctt
     1021 cattctccaa gtattggaaa ccaagaatac cactggatgt tggacatcgt ggtgcaggga
     1081 actcaacaac aactgccaag ctggctaaag tacaggaaaa tactattgct tctttaagaa
     1141 atgctgccag ccatggtgca gcatttgtgg aatttgatgt ccacctttca aaggacttag
     1201 tgcctgtagt gtatcatgat ctcacctgct gtttaactat gaaaaggaaa tatgaagctg
     1261 atccagttga attgtttgaa atcccagtaa aggaattaac attcgaccaa ctccagttat
     1321 tgaagctttc tcatgtgact gcactaaaaa ccaaagacca gaaacaatgt atggctgagg
     1381 aggaaaattc cttttctgaa aaccaaccat ttccttctct taagatggtt ttagagtcat
     1441 tgccagaaaa tgtaggattt aatatagaaa taaaatggat ttgccaacac agggatggag
     1501 tatgggacgg caacttatcg acatattttg atatgaatgc atttttggat ataattttaa
     1561 aaactgtttt agaaaattcc gggaagagga gaatagtatt ttcttcattt gatgcagaca
     1621 tctgtacaat ggttcggcag aaacaaaaca aatatcccat attatttttg acccaaggaa
     1681 agtctgacat ttaccctgaa ctcatggacc tcagatctcg gacaacaccc attgcaatga
     1741 gctttgcaca gtttgaaaat attttgggga taaatgccca tactgaagat ctccttagaa
     1801 acccatccta tgtccaagag gcaaaagata agggattggt catattctgc tggggtgatg
     1861 ataccaatga tcctgaaaac agaaggaaac tgaaggaatt tggagtaaat ggtctaatat
     1921 atgataggat atacgattgg atgcctgaac aaccaaatat attccaagtg gagcaactgg
     1981 agcgcctgaa gcgagaattg ccagagctta agaactgttt gtgtcccact gttagccact
     2041 tcattcctcc ttctttctgt atggagtcta aaatccatgt ggatgctaac ggcattgata
     2101 atgtggagaa cgcttagttc ctagtgcaca gaggacattc agaggctctc ccctgcgctg
     2161 aggttccgtc tccaccactg aacaccggtc gcctcttagg tttctcagtc caatgaagca
     2221 ataatgaagt attttactat cattacagtt cccgcaagaa tatcaagtac actatttatc
     2281 acttgtccag gtataattac caatcagtct ctgtacaaat gttaaacact ttaaatgaga
     2341 gatctaagcc tataatggtg aatcttcatt aaaagcataa tacttggaaa ttagctatat
     2401 aaatatctca tagttcaggc ttttcatttg attaggtctt aaatcttcag tgcttgagaa
     2461 aaatgactgc ataattatac ctgaccatgg aaataataag tacctcaagt gcatgcattt
     2521 gcactggtgg ctccagctgc acaagtctgt gtcatccatg tacataggtg tctttacatg
     2581 ggttgataga aacatgcact aggctccttt agtataaacc tcagactgct gccatttccc
     2641 acctgaccca aaccagcctg cagatgaacc tcaaaacttg tttcatagac tgttcaaaga
     2701 ttttaaaagt tccagaatgc tgcagggtaa cttaatgtat aaagtatttg taagaggtat
     2761 atattgcata tatagtcgtg tagatcagaa tgtgtaaatt tgactccgtg catgctttag
     2821 gtttgtttta agcatgaggt tgtacatgtt tactgtcctt gcatctggtg ctaggtgagt
     2881 gagatgttaa ggactgaaaa tattttgtcg cctaaaaaga gtatgcctat ttagtgtctc
     2941 actacctagt aagcaattgc cgtgtgtgct ccacagtagt taacccccat gcagaaaaat
     3001 aaatgtcctg aattctcaaa ttgctattct ttattgttta atatatatca tgtatgtaat
     3061 ttatttagga atgtagaaat tactgtatat aaatgcatgc ttttaggatt atactaagat
     3121 ttcattagaa gcagattgta ttgataaaac tgtaacttca gaatgaatgt taaataaaat
     3181 gacagattta ttttttcctc atcttaaaa
//
