LOCUS       XM_003751533            6601 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glypican 6 (Gpc6), transcript variant
            X1, mRNA.
ACCESSION   XM_003751533
VERSION     XM_003751533.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003751533.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003751533.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6601
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6601
                     /gene="Gpc6"
                     /note="glypican 6; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 55 ESTs, 4 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 25 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:691984"
                     /db_xref="RGD:1593308"
     CDS             714..2411
                     /gene="Gpc6"
                     /codon_start=1
                     /product="glypican-6 isoform X1"
                     /protein_id="XP_003751581.1"
                     /db_xref="GeneID:691984"
                     /db_xref="RGD:1593308"
                     /translation="MPSWIRAVILPLSGLLLTLPAAADVKARSCSEVRQAYGAKGFSL
                     ADIPYQEIAGEHLRICPQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRH
                     KKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEM
                     LNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAA
                     RTFVQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKG
                     CLANQADLDTEWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVS
                     AKVFQGCGQPKPAPALRSARSAPENFNTRFRPYNPEERPTTAAGTSLDRLRTVWRTMQ
                     HSVTDIKEKLKLSKKVWSTLPYTICKDERVTAGTSNDEECWNGHSKARYLPEIMNDGL
                     TNQINNPEVEVDITRPDTFIRQQIMALRVMTNKLKNAYNGNDVNFQDTSDESSGSGSG
                     SGCMDDVCPTEFEFVTTEAPAVDPDRREEESSASKLSSSLISWSLVCVVLALQRLNR"
ORIGIN      
        1 ggtagcacgt ttctccctct ctccctcccc tcctttctcc tttcctcttg cctcctgtgt
       61 cagtctccag gattttctct cttcctattt caagaagact ctcactggct ccctcagtct
      121 atgtgaagct gaggtttccc ctggatccca tacatttcca tcacatacct ccacgcacac
      181 acctccccga gagccccgcg ttcacaccca caaacacgcg cgctcacact cgcgccggcc
      241 tgtccatctc cctcgggggg gagccggcgc gcggtcccac cttcgtcgcg cacactggct
      301 aggcgagctc gcagcgctct acgactctgc ggctcggaac tcggaccgca gggctgaaca
      361 cccccactgt ggtatttaaa aaaagaaaga aagaaagaaa gaaagaagac atttccttgc
      421 tttttcctct tttcttctct ttctcgcacg gttttctacc gtagtggcta gcggagccgg
      481 cagccttccc aaggcagccc tggttggctt gccatcctcc atctggctta taaaagtttg
      541 ctgagtgcag tccagagggc tgcgcggctc gtcccctcgg ctggcggaag ggggtgacgc
      601 tgggcagcgg ctaaggagcg cgccgcaggc tctggcgggc tttcggctcg aggggcaagg
      661 tgaagagcgc acagggagct gggggctgcc gaggtggact tgcatgttgc accatgcctt
      721 cttggatccg ggctgtgatt cttcctctct ccgggctgct gctgaccctc ccggccgcgg
      781 cggacgtgaa ggctcggagc tgcagcgagg tccgtcaggc ttacggtgcc aagggattca
      841 gcctggcgga catcccctac caggagatcg caggcgagca cttacgcatc tgccctcagg
      901 aatatacatg ctgcaccaca gaaatggaag acaagttaag ccaacagagt aaactggagt
      961 ttgaaaacct tgtagaagaa acaagccatt ttgtgaggac cacgtttgtg tcaaggcata
     1021 agaaatttga tgagtttttc cgagagctgc tggaaaatgc agagaagtcc ctaaacgaca
     1081 tgtttgtccg gacctacggg atgctgtaca tgcagaattc ggaggtattc caggacctct
     1141 tcactgagct aaagaggtac tacacagggg gtaacgtcaa cttggaggag atgctcaatg
     1201 acttctgggc tcggctcctg gagcggatgt tccagctgat aaacccccag tatcacttca
     1261 gcgaggacta tctggaatgc gtaagcaagt acacagacca gctgaagcct tttggagatg
     1321 tgccacggaa actgaagatt caggtcaccc gcgccttcat tgcggctcgc accttcgtcc
     1381 agggcctgac tgtgggcaga gaagttgcca accgagtttc caaggtgagc cccacccctg
     1441 ggtgcatccg ggctctcatg aagatgctgt actgcccata ttgccgaggc ttgcccactg
     1501 tgagaccttg caacaactac tgcctcaacg tcatgaaggg ctgtctggcc aaccaggcag
     1561 acttggacac tgagtggaat ctcttcatag atgcaatgct cttggtggct gagcgactgg
     1621 aagggccgtt caatattgaa tcagtcatgg acccaataga cgtcaagatc tctgaagcca
     1681 ttatgaacat gcaggaaaac agcatgcagg tgtcagcgaa ggtctttcaa ggctgcggcc
     1741 agcccaaacc tgctcccgct ctcagatctg ctcgctccgc tccagaaaac tttaacaccc
     1801 gctttcgacc ctacaacccg gaggaaagac ccacaaccgc agcaggcact agcttggaca
     1861 ggctgaggac tgtgtggagg accatgcagc acagtgtcac agacataaaa gagaaactga
     1921 agctctctaa aaaggtctgg tcaacattgc cctacaccat ctgcaaggat gaacgcgtga
     1981 cagcaggaac ctccaacgac gaggagtgct ggaatggaca cagcaaagcc agatacttgc
     2041 ctgagatcat gaatgatggg ctgaccaacc aaatcaacaa ccctgaggtg gaggtggaca
     2101 tcacgcggcc agacactttc atcagacagc agatcatggc tctccgagtg atgaccaaca
     2161 aactgaagaa tgcgtacaat ggcaatgacg tcaacttcca agacacaagt gatgaatcca
     2221 gtggctcagg cagtggcagt ggctgcatgg atgatgtgtg ccccacggag ttcgagtttg
     2281 tcaccaccga agcccctgca gtggacccgg accgccgaga agaggaatct tcggcctcaa
     2341 agctcagctc ttccttgatc tcctggtctc tggtctgcgt cgtcttggcc ctgcagagac
     2401 tcaacagata atcgtgggct ttggtcaaac gaaactgcgt tttagctctt ctgtggccaa
     2461 cacccttctt ttcttacact ctcggacaat ggaccacgcc acaaaactcg ccgttttcta
     2521 tgacaagaga gcagtcttgc gatctgcctc cctttttgtt ttcccaaaga gtaccgggta
     2581 ccaggtggtc tgcttctctt tccttcagct atccgtgggg acctcgtgta ttccagagag
     2641 aattcttact caaatctttc gtaccaagag atttttttct taccgtcatt tgcttttatg
     2701 ctgcaaaatt aaaggaattt cacatcgtga gggttttttt ttgggggggg gggatatttt
     2761 taacaaccca tttaaaatag gaagaaaatg attttccatt tcaaatcagg ccaaacccca
     2821 agacaaatgc attctcaaca aggaaaggaa ggagagaaaa taataaagga actttcatcc
     2881 tatcaggttt ggcactgaca gccaactcct ggggtgagct tttctgtgac aagtgagatt
     2941 tacaaaatgc ttctgaggag aaagtgtacc atttttatgt agtgggaata cactgttgtc
     3001 ttggcctcta accaaaccga ttcgtagata ctgaagtaaa tttaggatta tgtctttgta
     3061 taatcttatt gcaactcaac acctctcgtc cacctgcctg accccaccac tcactgagag
     3121 cagcattttc tgtcccctaa tgtctgtcag ttgtacccaa ttgacactga ttgtcttcag
     3181 tttttcacgg atgcccccat ccagtctcca ctctcctagg tcttgactaa aaaaaaaaga
     3241 aagaaaaaga aaccatcttc catggtacag tctcttcttt ctccgccaga ctgacatgag
     3301 ctagatgtct cagctcccgt gttccagact ccccctcccc agataagggt tctcctactg
     3361 atgtgacaat tatctccaca cataaggttt tgttattgac tctttgtgtc aattggtttc
     3421 agcatcacaa gggcattctc ttataaaaac aactcacaac aataacaaca acaaaagtca
     3481 agacaaaaaa aaagagagag agagaaaaca ctatatatag tatcgtcatg gagattcttt
     3541 tcactttttt agtcttagta tgatcatcta tttttatatc tatatatata tatatataaa
     3601 tcacagattt taacttctta attccaagct cagggttgac acctctttgt aacagaactg
     3661 tttttgtcaa ccacctcctc ttgttctgtg ctgctcagaa aacagactcc ttagtgatct
     3721 ttgagcacca agaaccaaga aggagaactt tttatgtatc taactgtcca ctgatgacaa
     3781 gtttgccagg gcacaccctg ttcacacgag tttgctttgc ccctggtgct gcaaactgtc
     3841 ctgagctcat gggacaagcc tggtgtgcaa gacgttactg gtgaaagaac gtgtgtgtgc
     3901 aaacaatgtt actcatgaaa aagcattgct ctcgtgtaca gcacctttgg cctaggactt
     3961 ctactgggta ctataactga atggcctaaa ccaaggggcc atttttagag ccactgccta
     4021 acctgtccac caagccaggc ccaatgcttc ccctgacaga gagaagcaga ttacaccaaa
     4081 ctggggttgt atgaagacag ttggctaacc atgttcttct ttcttccctt tttgttttta
     4141 tttttatttt ttttgctttt atgatgcatc tgggataggg aaaagaagta tcttaagaca
     4201 ccacagcata ccgcatgcca atcacacttt gactgactca tcgacagtat tgacacataa
     4261 atgatatttg atatttttct atctctgctc tcaccgaaat taacatttag ttatagattt
     4321 aatcatcgtg tctaggtaga acacatgcac tcgtattaag gatacttgag cacttttgaa
     4381 agacagaacg tatagcatct gtcaccactt tatgcctaat ggagtaagaa gcaatgcagg
     4441 attctgagag actctgtggt atcttccatt tgcatccatg cgacacctaa tccagttcag
     4501 aatggcagcc cttcagaaaa ccatccagct gaggacccca cttcagcttc taatccccag
     4561 ttacatgtaa cacatctccg tgaaggagca gccattcatg ttaggtggta cgtcgtatgt
     4621 tcagaaatca gtattgtttt tatttttccc aataattatg gtgcaataca aactaagcca
     4681 atgccgaatc tccaggatat ttgaataatg acttcttttt atggctttaa gctccaactt
     4741 ccttcttaaa atatttccgc attatcttct ataaaagaaa tcaggaggtc ttgtttctta
     4801 ccgtgcaaga gggtttacat gacaacgcat tacattaatg aatgtgagcc catgttctgt
     4861 gcacgcccat cacacaaaca acatagaaag gcctgttttc tttgatgcag cacctgtatt
     4921 ctcaagggta tgactactga caagatacag tgatgcccat gaagcaggca gagctgaaat
     4981 gagggccaac tgacaaagcc acatcgttag tcattttaca cagacacggt caaaatgttt
     5041 cacttgccct tcctggtcat tgtcatcgcc catcttaagg cttttagacc gatttgacgt
     5101 taaaggtttc tttttttctg tcccccctaa gccttttagc acagttaccc cttttcggta
     5161 ccttgggatc ctcctcccag attaagtttc tcatcccagc gtagtgatag gagatgtctc
     5221 gatctttcct catcatccct ggcctgccct cgtttgtgaa gacgtcgtcc cctaaaatct
     5281 gtaatcacat cacgacttgt gttatgagta gagaggaaag ggacccccaa cattggacac
     5341 tgggaacggg tgggtgacgc tcataactgc aaactcttag cttatcgaag tgcctctatt
     5401 tacatgttcc tcggttttaa tatgtatttt tctaacagaa ataccagtct gtaatcgatg
     5461 tttattatac tctgtatatg tcacaacaaa ggctaagtgg aggctaatgt cttcagcaga
     5521 gaagaacgaa ctgcaaattt atgaacaaga gccctgtagt cctggattgg cagccacaag
     5581 acagctttct gtcactgcag tgaaggccaa gtgggcactt tgattacagc cgtcaccgac
     5641 tgtagcacta gaaattctga ttcccttacc cagggaggaa ggtgacataa gtcacctgct
     5701 tcaaacgtaa gggagagaaa gtactttgtc tacactgaaa aactctatcc attggcgagc
     5761 agtagtagtt tcaaaaggag cattctttgg atcaaactca ttgagcatgt cgtcggacgc
     5821 agatccatga aacttagttt acattccctg ctgtagacat tagccttcct taattcttct
     5881 tgccattaca cacacctttc ggctacaagc taagcaccaa ctttaaatcc tcaaggagga
     5941 gtagaactca gtgaaaccct ggcttgtgaa tcttttctca cctctctgca aggctgagta
     6001 ccaggtggtt tgactttagg tttcaaatgt tggcaaacgc agcatttgac ttctccaaaa
     6061 gcttgcagat actcacgccc atactcattg acttacagtc actaccagac atttaaattc
     6121 aaaacaaaat tgagagcctt gctacctgaa gagcaatgga gtccatcgct tatcaatctt
     6181 cagtgagttc ctccttggtg acgatattag ccagtgcttg gttttaggcc aaagtataca
     6241 aatagagtat tgatttgtac gcattctgga gacttgctat gtcataattt gccatagccc
     6301 agacccagct tagcacgggc atgcttggga cttcactgac agtggagggg atactgaagt
     6361 ctttggtgtt gccttgtaag aaggacttac ttcatgagta acaccttaag gagggtacca
     6421 cagtgcagtc tctgtgtgca tatacagaac acatatgcag gagaaatgtg tgcaccgatc
     6481 aaacctaaaa ctttacgtga ctgtcaaatg actattattt gggttaagat tttctttttc
     6541 acttctgatt tggatagaaa attgctatta atcttgtatt aaaatagttt ataaaaatct
     6601 a
//
