LOCUS       XM_006257580            2339 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glypican 4 (Gpc4), transcript variant
            X1, mRNA.
ACCESSION   XM_006257580
VERSION     XM_006257580.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006257580.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006257580.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2339
                     /gene="Gpc4"
                     /note="glypican 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 38 ESTs, 14 long SRA
                     reads, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 55 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:317322"
                     /db_xref="RGD:1359399"
     CDS             168..1841
                     /gene="Gpc4"
                     /codon_start=1
                     /product="glypican-4 isoform X1"
                     /protein_id="XP_006257642.1"
                     /db_xref="GeneID:317322"
                     /db_xref="RGD:1359399"
                     /translation="MARLGLLALLCTLAALSASLLAAEPKSKSCSEVRRLYVSKGFNK
                     NDAPLYEINGDHLKICSQDYTCCSQEMEEKYSLQSKDDFQTVVSEQCNHLQAIFASRY
                     KKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVAGNVNLEEM
                     LNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAA
                     RTFAQGLAVARDVVNRVSVVNPTAQCTQALLKMIYCSHCRGLVTVKPCYNYCSNIMRG
                     CLANQGDLDLEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVS
                     QKVFQGCGPPKPLPAGRISRSISESAFSARFRPYHPEQRPTTAAGTSLDRLVTDVKEK
                     LKQAKKFWSSLPSTVCNDERMAAGNENEDDCWNGKSKSRYLFAVTGNGLANQGNNPEV
                     QVDTSKPDILILRQIMALRVMTSKMKNAYNGNDVDFFDISDESSGEGSGSGCEYQQCP
                     SEFEYNATDHSGKSANEKADSAGGAPAEAKPYLLAALCILFLAVQGEWR"
ORIGIN      
        1 ccgccccctc cctccctagg gccgccccgc ttggccaagt ttgcggagcc tcgctgtgca
       61 agccgggcca gtcaatcagc ggcagagctg agaagggcac agccgtgcgg ccgagggcag
      121 tgagctgagc cgagctgggt gggagcgcgt ccgtcagggt ccgcaccatg gcacggttag
      181 gcttgctcgc gcttctctgc actctggcgg cgctcagcgc ctcgctgctg gctgcggagc
      241 ccaagtcgaa aagttgttcg gaagtgcgac gtctctacgt gtccaaaggc ttcaacaaga
      301 acgatgcccc cctctatgag atcaatggtg accatttgaa gatctgttcc caggattata
      361 catgctgttc tcaagagatg gaggagaagt acagtctgca aagtaaagat gatttccaaa
      421 ctgtggtcag cgagcagtgc aaccatttgc aagccatctt tgcatcccgt tacaagaagt
      481 ttgatgaatt tttcaaagaa cttcttgaaa atgcagagaa atccctgaat gatatgttcg
      541 tgaagacata cggccactta tacatgcaaa attcagagct atttaaagat ctgttcgtag
      601 agttgaagcg ctactatgtg gcgggaaacg tgaacctgga agaaatgtta aatgacttct
      661 gggctcgcct tctggagcgc atgttccgcc tggtgaactc ccagtaccat ttcacagatg
      721 agtacctgga atgtgtgagc aaatacactg agcagctgaa gccttttgga gacgtccctc
      781 ggaaactgaa gctccaggtt acccgtgcat tcgttgcagc caggaccttc gctcaaggct
      841 tagcagttgc aagggatgtc gtgaacagag tctctgtggt gaatcccaca gctcagtgca
      901 cccaagcact gctgaagatg atctactgct ctcactgccg gggcctggtg actgtgaagc
      961 cctgttacaa ctattgctca aacatcatga gaggctgttt ggccaaccaa ggagaccttg
     1021 atttagagtg gaacaatttc atagatgcca tgctgatggt ggcagagagg ctggagggtc
     1081 ctttcaacat tgagtccgtt atggatccca tcgatgtgaa gatttctgat gctatcatga
     1141 acatgcagga taatagtgtt caggtgtctc agaaggtttt ccaaggctgt ggacctccaa
     1201 agcctctccc ggctggacga atttctcgtt ccatctctga aagtgccttc agtgctcgat
     1261 tcagacctta tcatccagag caacgcccaa ctacagcagc tggcactagt ttggaccgac
     1321 tggttactga tgtcaaagag aaactgaagc aagctaagaa gttctggtcc tctctcccaa
     1381 gcactgtctg caatgatgag aggatggcag caggaaatga gaatgaggat gactgttgga
     1441 acgggaagag caaaagcagg tacctgtttg cagtgacagg aaacggatta gccaaccagg
     1501 gcaacaaccc agaagtgcag gttgacacca gcaagccgga cattctgatc cttcgtcaaa
     1561 tcatggccct tcgggttatg accagtaaaa tgaagaatgc ttacaacgga aatgacgtgg
     1621 acttctttga tatcagcgat gagagtagtg gagagggaag cggaagcgga tgtgaatatc
     1681 agcagtgccc ttcagagttt gagtacaacg ccactgacca ttctgggaag agtgccaacg
     1741 agaaagctga cagtgccggt ggtgcccctg cagaggcaaa gccctatctc ctcgctgccc
     1801 tctgcatcct gttcctcgct gtgcagggag agtggagata attgtcaaac tctgagtaaa
     1861 agtgttcatc atcagaaagt tcaaaggcac cagttctcac tttttttttt ttaatcatcc
     1921 tagtgacttt gcttttaaat gaatggacaa caatgtacag tttttactgt gtggccactg
     1981 gtttaagcaa tgttgacttg ttgttgactt tgtttttctc attcagtttg aggggacagg
     2041 ggcctcctgc cttcaagtgt gtccctccgc actcccctcc tttgagactc gtgttatgcg
     2101 cggctagcgg tgtagttaca gaactgtagt tagttgtgta ttggtgatct tgttttcttt
     2161 gttggttttt ctcatttgtg gggttttcct tttccaatta tggtctcacc ttgtttctca
     2221 caagaaaacc agggtcgttt cttggcatgt aacatgtacg tatttctgaa atattaaata
     2281 gctgtacaga agcaggttta tttatcatgt tatcttatta aaagaaaaag cccaaacaa
//
