LOCUS       NM_001034913            3535 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus GC-rich promoter binding protein 1-like 1
            (Gpbp1l1), transcript variant 1, mRNA.
ACCESSION   NM_001034913 XM_017593386
VERSION     NM_001034913.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Mar 5, 2022 this sequence version replaced
            XM_017593386.2, NM_001034913.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.2409360.1,
                                           SRR26643287.14154.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               JAXUCZ010000005.1  135246988-135247140
            154-1168            JAXUCZ010000005.1  135259084-135260098
            1169-1281           JAXUCZ010000005.1  135260766-135260878
            1282-1411           JAXUCZ010000005.1  135263099-135263228
            1412-1698           JAXUCZ010000005.1  135263796-135264082
            1699-1771           JAXUCZ010000005.1  135271826-135271898
            1772-1962           JAXUCZ010000005.1  135274213-135274403
            1963-2103           JAXUCZ010000005.1  135281605-135281745
            2104-2268           JAXUCZ010000005.1  135283197-135283361
            2269-2393           JAXUCZ010000005.1  135284571-135284695
            2394-2496           JAXUCZ010000005.1  135285052-135285154
            2497-3535           JAXUCZ010000005.1  135286261-135287299
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..3535
                     /gene="Gpbp1l1"
                     /note="GC-rich promoter binding protein 1-like 1"
                     /db_xref="GeneID:313519"
                     /db_xref="RGD:1359562"
     exon            1..153
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            154..1168
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..1281
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             1222..2649
                     /gene="Gpbp1l1"
                     /codon_start=1
                     /product="vasculin-like protein 1"
                     /protein_id="NP_001030085.1"
                     /db_xref="GeneID:313519"
                     /db_xref="RGD:1359562"
                     /translation="MAQHDFVPAWLNFSTPQSAKSSTATFDKHGEHLSRGEGRFGISR
                     RRHNSSDGFFNNGPLRTTGDSWHQPSLFRHDSVDSGVSKGAYAGTTGNLSGWHGSSRG
                     HDGMSQRAGGSTGNHRHWNGSFHSRKGCAFQEKTPTEIREEKKEDKVEKLQFEEEDFP
                     SLNPEAGKQNQPCRPIGTPSGVWENPPSAKQPSKMLVIKKISKEDPAAAFSAAFTSGS
                     HHANGNKVSTMVPSVYKNLVPKPAPPPSKPNAWKANRMEHKPGSLSSSREAALTNPVS
                     VTKPVVLAAGVVLNAPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDERNE
                     DCSQSRDCDKLEGLRLEGSHTPEPKENGEQGCLQNGLSLPMVEEREVLSHSLEAEHRL
                     LKAMGWQEYPENDESCLPLTEDELKEFHTRTEQLRRNGFVKNGFLQGRSSSLFSPWRS
                     TCIAECEDSDTETSSSETSDDDAWK"
     exon            1282..1411
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1412..1698
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1771
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1962
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1963..2103
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2104..2268
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2269..2393
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2394..2496
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..3535
                     /gene="Gpbp1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctctgcccc ctcctgggcc ttgtgggccg ggcagccatt ttgggaagag ctttgttatg
       61 gttgtgggct agtcacctct gctggtcgga gaagctgggg acgcgtcctt agacgccgcg
      121 agtcgtcctt gaccgtagcc ccgccgctgc cggatttgca gactcaagtg gcctttttaa
      181 tgtttgtgta atgatggaga tggacccaaa ttagaaagtg atttcttcaa taaagcaata
      241 gaagattctt catatcactt ctggaagcac agttcagttt ttgggaaaga ggagaacaag
      301 tgaaatacag aaaattaata agaagaaaac ctcattttgg aattctcttt ctccttgacc
      361 cttacctttt ctacttataa ttttgctttg aatgtataaa tagtaaagac caaagaaata
      421 ggatatatat ttaggagctt tataccaaga catttgcctt gaaagctgct attctgtggc
      481 aggaaaaata tatcaagttt ctgttggatt ccttttacaa aaaacaaaac aagactactt
      541 atatctttag attttgaagg ttaaaaccaa tgaaagcatt tatctgcaca ctgctttaag
      601 cagttgtgta tgataatgag atttctgttt taaaagcttt tgttgtggat attgtgccac
      661 tggaactggt tgtgcagaag ctctatccca gtgctttact atacagtttt gacctgtcac
      721 cctgatgaca tttcctgttc acacctgaga ccacttgtct ttttagccat gaccttgtta
      781 tgaacagtgt ttgcactccc tgtgcagatg tccatgtttt gcctatttaa gcaacattat
      841 agtgccatta ctcaaggaag ttgaatgagg tgaacataga catagctttt ccccctttcc
      901 cccctttttt aaatgtaaca aataactttt tatgttcccc ttcccccttc cccttcccct
      961 tccccctgtg gaaaagtgtt gggaactagg tattgaggat gagcgattga gaggattcag
     1021 agggtgggcc acacagagct gggcttcttt gtgcttcatc acaaggcgtg ctgctgccca
     1081 ggctatttta gacccttttt acaagaaaac ctcgtggaag atacaggtgg caacttggat
     1141 acaggaccac agaggtgaca ctctgaggat cctggccatg aggttggatg cctcaacttg
     1201 ctgaaaagac actggaccta aatggcgcag catgactttg ttcctgcttg gctaaatttt
     1261 tcaacgccac agtcagctaa gtcatctaca gccacctttg acaaacacgg agagcaccta
     1321 tcccgtggag aaggtagatt tggaataagc cgtcgtagac ataattcctc tgatggcttt
     1381 tttaacaatg gacctctgcg gactacagga gattcttggc accaaccctc cctattccgc
     1441 catgactctg ttgactctgg tgtctctaag ggagcgtatg ccggaaccac agggaatctg
     1501 tctggttggc atggctcttc ccgaggtcat gatggcatga gccaacgtgc tggaggtagc
     1561 acgggaaacc accgacactg gaacggcagc ttccattccc ggaaaggctg tgcctttcaa
     1621 gaaaaaacac caactgaaat tagggaagag aaaaaagagg ataaagtaga aaagttgcag
     1681 tttgaagagg aagacttccc ttctttgaat ccagaagctg gcaaacagaa tcagccatgc
     1741 agacctattg ggaccccttc tggagtgtgg gaaaatccac ctagtgccaa gcaaccctca
     1801 aagatgctag tcatcaaaaa aatttccaaa gaggatcctg ctgccgcctt ttccgctgca
     1861 tttacctcag gatcccacca tgcaaatggg aacaaagtgt caaccatggt cccgagtgtt
     1921 tataagaact tggttcccaa gcctgcacca cctccctcta agcccaacgc atggaaagct
     1981 aacagaatgg aacacaaacc tggatcactt tcctccagcc gggaggctgc tttgaccaat
     2041 ccagtttctg ttactaaacc agtggtacta gctgctggtg tagttctcaa cgctcccaaa
     2101 gagagtccct ccagtactac ccctccgata gagatcagct cctctcgcct gaccaaattg
     2161 acccgacgaa ccacagacag gaagagcgag ttcctgaaga ctctgaagga tgagcgcaat
     2221 gaagactgct cccaaagtag agactgtgac aagctggagg ggctaagatt ggagggcagc
     2281 cacacacctg aaccaaagga aaatggagaa caaggttgtc ttcagaacgg gctttctcta
     2341 cccatggtag aggagaggga ggtcctgtca cactctctag aagcagagca caggttattg
     2401 aaagcaatgg ggtggcagga gtatcctgaa aatgatgaga gttgccttcc actcacagag
     2461 gatgaactca aggagtttca cacgagaaca gaacagctac gaaggaacgg gtttgtaaag
     2521 aatggcttct tacaaggccg tagttccagc ctgttctccc catggagaag cacttgcatt
     2581 gcagagtgtg aggactcaga cacggaaaca agcagcagcg agacgtcaga cgacgacgcc
     2641 tggaagtaga agtagaaatg ctcgcagctg ccctgccccg ctgagctcgg ccttgtgtta
     2701 gagaatataa agttctttcc tttcttctgt tgttgaatac ttcgtgcaca agggaaatag
     2761 tcatatccca aagacagagc cattgtcctg cttagctttt gttgttcttc cctgttatct
     2821 gctcagtaga catttgtgtg gtgggaattt ttaagcacac acagtacctg ttgggctgtg
     2881 cacaagtggg agctgtgcag gcaaagatgc agggaggggc gctgcgctgc tcaacagctt
     2941 ctgctcccag ccctgggcac ccagcctgtg ctcacacaat cattgtcaat gacaaagtga
     3001 ctattgaagt tataattgta ttaaattaat gctaataatt tggatatttt attttatttt
     3061 tggctgctgg ggtaacttag cccttaacca agcatatgtg gttgtttttg tttggggttt
     3121 tttttttttt ttcctttttt ttgggtacag ctgtaaaata tttggatata ggaaatgtta
     3181 ttcttgcagc cttgatattc agggtggatt gtaaaatatg aatttttgtg agattcaaag
     3241 attaagatta ttttgataac attatttaca gatttaaaag atgtggttac cacaagtctg
     3301 ttgaggggaa aaactactgc ataaaataac taacgtggaa taaatatttt gcatcagttt
     3361 ggattgtctt gtgtaagaaa tatattttct ttaaaattag agggtggatt ccttttttta
     3421 ggggaaatat ttttagaaat cttggggaaa actgaattca ggcccacctg tttctctttt
     3481 cagcaaaaat tcttgatgtg gaaaaacctg tgcaataaat tattaataaa cttca
//
