LOCUS       NM_001398883            6813 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus G patch domain containing 8 (Gpatch8), mRNA.
ACCESSION   NM_001398883 XM_001062937
VERSION     NM_001398883.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6813)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 27, 2021 this sequence version replaced XM_001062937.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2311203.1,
                                           SRR26643429.39273.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000010.1  88012449-88012523   c
            76-150              JAXUCZ010000010.1  87993747-87993821   c
            151-223             JAXUCZ010000010.1  87983794-87983866   c
            224-291             JAXUCZ010000010.1  87963298-87963365   c
            292-378             JAXUCZ010000010.1  87962547-87962633   c
            379-522             JAXUCZ010000010.1  87954699-87954842   c
            523-653             JAXUCZ010000010.1  87943995-87944125   c
            654-6813            JAXUCZ010000010.1  87932174-87938333   c
FEATURES             Location/Qualifiers
     source          1..6813
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..6813
                     /gene="Gpatch8"
                     /note="G patch domain containing 8"
                     /db_xref="GeneID:685233"
                     /db_xref="RGD:1596463"
     exon            1..75
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..4572
                     /gene="Gpatch8"
                     /codon_start=1
                     /product="G patch domain-containing protein 8"
                     /protein_id="NP_001385812.1"
                     /db_xref="GeneID:685233"
                     /db_xref="RGD:1596463"
                     /translation="MADRFSRFNEDRDFQGNHFDQYEEGHLEIEQASLDKPIESDNIG
                     HRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEMELDYAEDATERRRVLE
                     VEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYDH
                     AHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAECAPGSGPMFRP
                     TTVAVDEDGGEEDKDESSTNSGASAISSCGFGSDFSTEKGGPFTSVQITNSTGLSQAS
                     GLASQGISFGIKNNLGPPLQKLGVSFSFAKKAPVKLESIASVFKDHAEEGTSEDGTKA
                     EEKSSDQGVQKVGETDGGGNLDGKKEDEDPQDGGSLASTLSKLKRMKREEGTGATEPE
                     YYHYIPPAHCKVKPNFPFLLFMRASEQMEGDHRTHSKNAPENRKGSSPRPKGCSKAAA
                     SQGAEKTVSDVSEPQKEATVVGPSEPGGKTETKKCSGEGEGEQSVESLRESSESQMCE
                     SDPKEISQATPATKAGQGPKHPTGPFFPVLSKDESTALQWPSELLIFTKAEPPISYSC
                     NPLYFDFKLSRNKDAKAKGTEKPKDVGDSSKGHLQSPDPREPNKSKEGEQSVVLSEGR
                     VDEPASGAACSSLTKQEPGGSHASETEDTGRSHPNKKEPSGKSHRHKKKKKHKKSSKH
                     KRRHKADMEEKSSKAESGEKSKKRKKRKRKKNKSAPADSERGPKPEPPGSGSPAPPRR
                     RRRARDDSQRRSLPAEEGNSGKKDDGGAGSGSQDHSGRKHKGEPPASSCQRRTSAKHS
                     SRSSHRSQPSSGDEDSDNASSSHRPHQKSPSQYSEEEEEEEEEEEEEEEEEEEEDEDS
                     GSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQHSYSDDSYSDYSDRSRR
                     HSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSR
                     SSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQRSGSRKGSWGHESPEERR
                     SGRRDFIRSKIYRSQSPHYFRSGRGEGHGKKEDGRGEDSKGAGLPSQNSNAGGTGRGS
                     ESDCSPEDKNSVTARLLLEKIQSRKVERKPNVCEEVLATPNKAGLKYKNPPQGYFGPK
                     LPPSLGNKPVLPMIGKLPATRKSNKKCEDSALERGEEQEHSEPEEGSPRSRDAPLGHQ
                     FSSEDTAGPLSDPPPEEPKSEEATADHSVAPLGTPAHTDYPGDPAISHNYLPDPSDGD
                     ALESLDSGSQPGPVESNLLPIAPDLEHFPSYAPPSGEPSIESTDGTEDASLAPLESQP
                     ITFTPEEMEKYSKLQQAAQQHIQQQLLAKQVKAFPASTALAPATPALQPIHIQQPATA
                     SATSITTVQHAILQHHAAAAAAAIGIHPHPHPQPLAQVHHIPQPHLTPISLSHLTHSI
                     IPGHPATFLASHPIHIIPASAIHPGPFTFHPVPHAALYPTLLAPRPAAAAATALHLHP
                     LLHPIFSGQDLQHPPSHGT"
     exon            76..150
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            151..223
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            224..291
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            292..378
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            379..522
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            523..653
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
     exon            654..6813
                     /gene="Gpatch8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgtcctga ggaggagtga aggcggcaaa atggcggacc gcttctcccg cttcaacgag
       61 gacagagact ttcagggtaa tcactttgat cagtacgaag aagggcactt ggagattgag
      121 caggcgtccc ttgacaagcc tatagaatcg gataatattg gacaccgctt actccagaaa
      181 catgggtgga agctgggcca gggattggga aaatctcttc aggggagaac agatcctatt
      241 ccaatcgttg tcaagtatga tgtcatgggc atgggtcgaa tggaaatgga gctggattat
      301 gccgaagatg ctaccgaacg gcgccgtgtc ctagaagtag aaaaagaaga cacagaagag
      361 ctgagacaga agtacaagga ttatgttgac aaagaaaagg caattgcaaa agccttagaa
      421 gatctcagag ccaactttta ctgtgaactt tgtgataaac agtatcagaa acatcaggaa
      481 tttgacaacc acatcaactc ttatgatcat gcacacaaac agagattaaa agatctcaag
      541 caaagagagt ttgcccgaaa tgtctcttca agatcccgca aagatgagaa gaagcaagaa
      601 aaagcccttc ggcggctcca tgagttggca gagcaaagga aacaagctga atgtgcacct
      661 ggaagtgggc ccatgttccg accaaccaca gtggctgtgg acgaagatgg tggagaggag
      721 gataaagacg aatcatcaac caacagtggt gcgagtgcca tttcctcctg tggctttgga
      781 tctgacttct ccacagagaa agggggcccc ttcacgtcag tacagatcac taatagcact
      841 ggactgtcgc aggcttctgg gttagcctcg caaggtatca gctttggcat taagaataat
      901 ctgggacccc cactgcagaa attgggagtg tcgttttctt ttgccaagaa agctcccgtc
      961 aaacttgaat caatagcatc cgttttcaag gaccatgcag aagaggggac ctctgaggac
     1021 ggaacaaagg ctgaagagaa gagttctgac caaggggtgc agaaggtggg agagactgat
     1081 ggtggtggta atcttgatgg aaagaaagaa gatgaagacc ctcaggatgg agggtccctt
     1141 gcctcaacac tgtccaagtt gaagaggatg aaaagggaag aaggaacagg ggctacggag
     1201 ccagagtatt accactacat ccccccagca cactgcaagg tcaagccgaa cttccccttc
     1261 ttactcttta tgagggccag tgagcaaatg gaaggtgacc accgtacaca ctcaaagaat
     1321 gctccagaga acagaaaggg cagctctccc aggcctaaag gttgcagtaa ggcagcagca
     1381 agccaaggag cagaaaaaac agttagtgac gtttctgagc cgcaaaagga agccactgtg
     1441 gttgggcctt ccgagcctgg aggcaaaact gaaacaaaga aatgctcagg agagggtgaa
     1501 ggtgagcaaa gtgtggagag tcttagagag agctcagaga gccagatgtg tgaatccgat
     1561 cctaaagaaa tttctcaggc caccccagca acaaaagcag gccagggacc caagcatcct
     1621 accggcccgt tcttcccagt tctgagcaag gacgaaagca ctgccctgca gtggccgtca
     1681 gaactgctca tcttcaccaa agcagagcct cccatttcct acagctgcaa ccctttatac
     1741 tttgacttta aactttcaag aaacaaagat gctaaagcta aagggacaga gaagccaaaa
     1801 gatgtcggag actcgtcaaa gggtcatctc cagagccctg atcctagaga accgaacaaa
     1861 agcaaggagg gggagcagag tgtagtgctc tcagaaggca gagtggatga acctgcttca
     1921 ggggctgcct gtagcagcct gaccaagcag gagcctgggg gtagccatgc atcagaaacc
     1981 gaagacaccg gaagaagcca tcctaacaag aaagaaccat caggcaagtc tcacagacac
     2041 aaaaagaaaa agaaacacaa aaagtccagt aagcacaaac gtagacacaa ggctgacatg
     2101 gaggaaaaga gttcaaaggc agagtctggg gaaaaatcta agaagcgcaa gaaacgaaaa
     2161 aggaagaaga acaaatcagc cccagctgat tctgaacgag gacccaaacc agagcctcct
     2221 ggaagtggca gccctgcacc accaagaaga cggcgccgag ctcgagatga ctcccagcgg
     2281 agatcccttc ctgctgaaga aggaaacagt gggaagaagg acgatggtgg agctggtagt
     2341 ggttcccaag atcacagtgg caggaaacac aaaggtgaac cgccagcctc ctcctgccag
     2401 cggagaacta gtgccaaaca cagcagccgg tccagccatc ggagccagcc cagcagtgga
     2461 gatgaggata gcgataacgc ttcttcttca cacagaccgc accagaagtc tccgtcccag
     2521 tacagtgagg aggaggaaga agaggaggag gaagaggaag aagaggagga agaagaggag
     2581 gaagaagatg aagactcggg tagtgagcat tctcgtagcc gctctcgatc tggccgtcgc
     2641 cattcctcac atcgttcttc ccggcggtct tattcaagca gctctgacgc ttcttcagac
     2701 cagagctgct atagtagaca gcacagttac tctgatgata gctatagtga ctacagtgac
     2761 cgatcaagaa ggcactctaa gcgctctcat gattcagatg attcagacta tgccagctcc
     2821 aaacacaggt ccaaacgaca caaatactca tcatctgatg atgactatag cctcagttgc
     2881 agccagtccc gaagccggtc tcggagtcat acaagggagc gatcaagatc ccggggtcga
     2941 agccgcagta gcagctgtag tcgcagtcga agcaagagaa gaagtcgcag caccacagcc
     3001 cacagctggc agcgaagccg aagctacagc cgagaccgga gccgcagcac caggagccct
     3061 tctcagagat caggttccag aaaggggtcc tggggtcacg agagccccga ggaaaggcgc
     3121 tctggccgtc gggatttcat tcgttcaaag atttaccgct ctcagtctcc ccactatttc
     3181 cgatcaggtc ggggagaagg tcatgggaag aaagaagatg gcagaggaga ggacagtaaa
     3241 ggagcaggcc tgccctccca gaatagcaac gctggcggca caggaagagg gtcagaaagt
     3301 gactgcagcc ccgaagataa gaactctgtt actgccagac tgctgctaga gaagatccag
     3361 tccaggaaag tggagaggaa acccaatgtg tgtgaggagg tgctggccac ccctaataag
     3421 gctggactca agtataagaa ccccccacaa ggttacttcg ggcctaagct ccccccgtct
     3481 cttggtaata agcctgttct tccaatgata gggaagcttc cagctactcg gaagtccaat
     3541 aagaaatgtg aagactctgc cttggaaagg ggtgaagagc aggagcattc agagccagaa
     3601 gaagggtccc caaggagcag ggatgctcca cttgggcatc agttctcctc agaggacaca
     3661 gctggtccct tatcagaccc tcccccagaa gagccaaagt ctgaagaagc tactgctgat
     3721 cactctgtgg ctccactagg caccccagca cacacggact accctgggga tccagccatc
     3781 tcccataact acctccctga ccccagtgat ggggatgctc tggagtctct ggatagcggc
     3841 agtcagccag gccctgtgga atccaacttg ctgcctatag ccccagacct tgagcacttc
     3901 cccagttatg cacctcccag tggggagcct agcattgagt caacagacgg gactgaggat
     3961 gcttccttgg ctcctctaga gagccagccc atcaccttca cccctgagga gatggagaag
     4021 tacagcaagc tccagcaggc cgcacagcag cacatccagc agcaacttct ggccaaacaa
     4081 gtaaaggcct ttccagcctc aacagcccta gccccagcca caccagccct gcagcccatc
     4141 cacattcagc agccggccac agcctctgcc acctccatca caactgttca gcacgccatc
     4201 ctacagcatc atgctgcagc tgctgccgct gccatcggca tccaccccca cccccacccc
     4261 cagccacttg cccaagtgca tcacattccc cagccccacc ttaccccgat ttccttgtcc
     4321 catctcactc actcaattat ccctggccac cctgccacct ttcttgctag ccaccctatc
     4381 catataatcc ctgcttcagc catccatcct gggcccttca cctttcaccc cgtcccacac
     4441 gctgccctct accctaccct gctcgcgcca cggcctgctg cagcagctgc cactgccctc
     4501 catcttcacc cactacttca ccccatcttc tcaggtcagg acctgcagca ccctcccagc
     4561 catgggactt gagctgggag tcggaagcct atgttgagcc agggaaggtg acctattctt
     4621 cccttggggg tgtagagcca tttataccag caagtaaaag ctggaacagg cagtgtcttg
     4681 acagccaaag aaatgagttt tggcttgcag ggatggattt agatttgagg tttgctttgg
     4741 gtttactatc agggatattt ccccccctat ccaacccccc ctccctcccg tgtttctaag
     4801 ctagggaaca ccagtaagag ctgcccacag ccctctgcag cagtctccag actgtcagta
     4861 atcctcctcc tctactttct gatcctctgc acttcccctc tgtgagttcc gaacatttcc
     4921 ctcctctaaa gggttgtcac caaagcactt gccatgggcc catctggtcc tgccttctca
     4981 gtgccacgag gaaggccgga ctgtctctcc agtggtgaaa actccacttt tcggcagtgt
     5041 ctttgactat ccttagtgac acgttatccc aggtgaggtg gaggaggggg tctaacctag
     5101 aaccaaaagc aactcaggct gcgatcgacc ccttccttac agacagccat gcatttggca
     5161 ctactgtcct cctgcccctc acccagaagg ggcatctaca tatcccagaa aagaagatcc
     5221 tagcgtgagt agaagctatg ctgaacatag ggtcacccat gtgcttccca gaaaggagct
     5281 cgtgtctgaa gggtatactt tcttctgtta tgttgatgtt ttctttttaa tttataggat
     5341 tttttaatgt aaaattgcac tgaactctat aaacgtaaat gctgcttttt gtagctcata
     5401 ttaagaaggt tccgtatttg tagtatactg caataatatt ttttacatca gctctttaag
     5461 tgatccttgt tctggtggct ttctgtaaat atgtttgccc tagttgaatt aagaaacttt
     5521 aaaggttata aaataaaaag aaaaaataaa gtatttgttt tctgctagat gcaaaaatga
     5581 ctaagcatgt atattttatc aatctcctgt attttttaaa gttatgaact ataaaaatgg
     5641 taactttttt tgctgggaca tgttaataat tcgcagtagt ggttcgtgct gggttcttga
     5701 gttgtcgagc aacaggcagc agccagtgtc aggaggacgc tcagtcacgg tggtctccct
     5761 ggtgtgcttt gttagacagt ggactccaca gagtccggag gggaggattg gttcaacagc
     5821 tttattctct ggaagcagtg acactcggtg actgtctagg aagagggact cttgggtttc
     5881 cctgggtact ttgttccgga cagtcttact tgccttccta gtatttagcc ccctctgaca
     5941 attttttaaa tgtgcctttt gggttggcta gaaactaaaa tagaagtaga ccagaggata
     6001 atagggttgg gacagtcttc tcctcttcgt tgggaggtga gtagttcaag atttttggct
     6061 ttgcagttct atgccatctg tccagctcga tttcaatttc agcagtagag gctccttttt
     6121 tcttttctcc cttgacactg accagaagtc catccatccc tctccccttt ggccttcccc
     6181 aggctctcag ccctccttaa cacagaccca aaggtgcttg taatgcaggt ctcatctcct
     6241 ttattagtac tcttaggact agaactggct aagcagtcaa ctgacatcgc cctgcttgcc
     6301 taagctaagc ttcgctctcc ctgcctctca aatccccaac ggaatgggct ttgtaaagga
     6361 gcagttgctg ggcaaatgag gcacttactt ggctgagccc ctccttcctt ctcagtgtcc
     6421 ctgtcggttt acaagtctca ctttttggat aactagccct ggaaagatgg catctatttg
     6481 aagtgaaggg actggttctt cttgctttca gctcgtgtaa atatttaaat aaaacagtgt
     6541 taacattttg tgctgcttcc cttaggttgt agacatcgag ccatgctctg gccacctctg
     6601 ccttcctggg ggcagttttc tttaacttcc agaatagtga ttttaaaact tccaaaaaaa
     6661 aaaagaaaaa aagaaaaaaa ggaaaaacaa aataacctgt ccttacgtac aagcataaca
     6721 gattgtattt gactttatca cacatgatag agagatatat gctgtaaagt gaaggagagg
     6781 aactttctaa taaaccaaca ctttggaaac tta
//
