LOCUS       NM_001399446            2031 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus G patch domain containing 3 (Gpatch3), mRNA.
ACCESSION   NM_001399446 XM_342933
VERSION     NM_001399446.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2031)
  AUTHORS   Nie,Y., Ran,Y., Zhang,H.Y., Huang,Z.F., Pan,Z.Y., Wang,S.Y. and
            Wang,Y.Y.
  TITLE     GPATCH3 negatively regulates RLR-mediated innate antiviral
            responses by disrupting the assembly of VISA signalosome
  JOURNAL   PLoS Pathog 13 (4), e1006328 (2017)
   PUBMED   28414768
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2031)
  AUTHORS   Ferre-Fernandez,J.J., Aroca-Aguilar,J.D., Medina-Trillo,C.,
            Bonet-Fernandez,J.M., Mendez-Hernandez,C.D., Morales-Fernandez,L.,
            Corton,M., Cabanero-Valera,M.J., Gut,M., Tonda,R., Ayuso,C.,
            Coca-Prados,M., Garcia-Feijoo,J. and Escribano,J.
  TITLE     Whole-Exome Sequencing of Congenital Glaucoma Patients Reveals
            Hypermorphic Variants in GPATCH3, a New Gene Involved in Ocular and
            Craniofacial Development
  JOURNAL   Sci Rep 7, 46175 (2017)
   PUBMED   28397860
  REMARK    Publication Status: Online-Only
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Jan 7, 2022 this sequence version replaced XM_342933.8.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.23093.1,
                                           SRR26643429.21203.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-462               JAXUCZ010000005.1  151083970-151084431
            463-884             JAXUCZ010000005.1  151086826-151087247
            885-1059            JAXUCZ010000005.1  151088274-151088448
            1060-1119           JAXUCZ010000005.1  151089453-151089512
            1120-1241           JAXUCZ010000005.1  151091517-151091638
            1242-1369           JAXUCZ010000005.1  151091918-151092045
            1370-2031           JAXUCZ010000005.1  151092721-151093382
FEATURES             Location/Qualifiers
     source          1..2031
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2031
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /note="G patch domain containing 3"
                     /db_xref="GeneID:362615"
                     /db_xref="RGD:1311216"
     exon            1..462
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..1586
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /codon_start=1
                     /product="G patch domain-containing protein 3"
                     /protein_id="NP_001386375.1"
                     /db_xref="GeneID:362615"
                     /db_xref="RGD:1311216"
                     /translation="MATPRELDEESAVYLVVSGIPAVLRSAQLRSYFSQFREQRGGGF
                     LCFHYRHRPERGPPQASPDAAGAAPDPAAEDAAQPTASDARAVPARGSAAVQTRTCCC
                     IVSVRGVAQAQRLLRMYSGRRWLDSQGTWLPGRCLIRRLRLPTEASDLGSFPFKTRKE
                     LQSRRAENEAFTLADLRQLPELNPPVLMPNGNVGTPLRVFLELIRSCRLPPRIITQLQ
                     LQFPKTGSSRRYGNVPFLYEDSETVEQEEHVYTADGEEIPQGACVEDPAASSMDEPED
                     EGQQEEEESGSEDDDDRGEEWERHEALHEDVTRQERTTERLFEEEIELKWEKGGSGLV
                     FYTDAQFWQEEEGDFDEQTADDWDVDMSVYYDKDGGDKDARDSVQMRLERRLREGQED
                     GSVIGRQVGTFERHTKGIGRKVMERQGWAEGQGLGSRCSGVPEALDGDGQHPRCKRGL
                     GYHGEKLQPFEQPKRIRGTGLGLISTIYDEPLPQDQRDSLLRRQPPTSMKFRTDMTFV
                     RGSSCALDRPSEPE"
     exon            463..884
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1059
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     exon            1060..1119
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1241
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1369
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..2031
                     /gene="Gpatch3"
                     /gene_synonym="Gpatc3; RGD1311216"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcatgtgaca gtccaagatg gcgacgccca gggagctgga cgaagagtcg gcggtttacc
       61 tggtggtgag tgggatcccg gctgtgttac gctcggctca gctacggagc tactttagcc
      121 aattccgaga acagcgcggc ggaggttttc tgtgtttcca ctaccggcat cggcccgaga
      181 ggggccctcc gcaggcgagt ccggacgcgg ccggagctgc cccggaccct gctgctgagg
      241 atgccgccca gcctacagcc tccgatgccc gcgctgtccc cgcccggggc tctgctgcgg
      301 tccagacccg aacctgctgc tgcatcgtct cggtgagggg agtggcgcaa gctcagcgac
      361 tgcttcgcat gtactcgggt cgccggtggc tggactctca ggggacctgg cttcctggcc
      421 gttgtctcat acgcaggctt aggctaccca ctgaggcttc agatctaggg tcctttccct
      481 ttaagacccg gaaggagcta cagagtcgaa gggcagagaa tgaagctttt accttggctg
      541 acctgaggca gctcccagag ctaaatccac cagtgctgat gcccaatggc aatgtgggca
      601 cacccctgcg ggtcttttta gagttgatcc ggtcctgccg tctaccacct cgaatcatta
      661 cccagctaca gctccagttc cccaagacag gctcctcccg gcgctatggc aatgtgccct
      721 ttctgtatga ggactcagag actgtggagc aagaagagca tgtgtacaca gcagacgggg
      781 aggagatccc ccagggagcc tgcgtggaag atccagcagc aagctccatg gatgagcctg
      841 aggatgaagg gcagcaagag gaagaggagt ctggctcgga agatgacgat gaccggggtg
      901 aggagtggga gcgacatgaa gcgctgcacg aggatgtgac caggcaggag cggactactg
      961 agcggctctt tgaggaggag attgagctca agtgggagaa gggtggctct ggcctcgtgt
     1021 tctacacgga tgctcagttc tggcaggagg aagaaggaga ttttgatgag cagacagctg
     1081 atgactggga cgtggacatg agcgtctact acgacaaaga tggtggagac aaggatgccc
     1141 gggactctgt ccaaatgcgc ctggaacgga gactccgtga aggtcaggaa gatggctctg
     1201 tgataggacg ccaagtcggc acctttgagc gccacaccaa gggcattggc cggaaggtga
     1261 tggagcgcca gggctgggct gaaggccagg gcctgggtag taggtgctcc ggggtgcctg
     1321 aggccctgga tggggatggc cagcacccta gatgcaagcg tggattggga taccatggag
     1381 agaagttaca gccatttgag caaccgaaga ggatccgtgg aaccggcttg gggctcattt
     1441 ccacaatcta tgatgagcct ctgccccaag accagaggga ctccttgctc cggcgccagc
     1501 cacccaccag catgaagttt cggacagata tgacttttgt gagaggttct agctgtgcct
     1561 tggacagacc ttcagagcct gagtgaggct aagtccttgg tcaggatgac tcagctgcaa
     1621 ggacatagcc ctctacccgg gtcttgccaa gtggacctga agcagccaag agcttgggac
     1681 tagcccttta ggcagctggc tcatatgtgc agacctgagc gtgcccactg tttctctacc
     1741 tcaaagatga tttcacaaaa aacccctccg gctcctgggg tgtttgtgcc taaagacctt
     1801 tctttgatct ctgaaccctc gtgcttgttt gggtttgccc cagaaccttg aagatcttga
     1861 tggcctgtgg cacaatcaag tcggttttgg gggttatctg aaggagggct ccatgaagcg
     1921 aggaaaaggg accagagcac taatccagag agggtcggcg gtcccttacc acctttaccc
     1981 tctagctagg aacggatctg cacgagaata aaccagttta cccggcatgg a
//
