LOCUS       NM_001134559            3001 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus G patch domain containing 2-like (Gpatch2l),
            mRNA.
ACCESSION   NM_001134559 XM_001058140 XM_234425
VERSION     NM_001134559.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001134559.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.36542.1,
                                           SRR26643296.18313.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000006.1  111614431-111614502
            73-744              JAXUCZ010000006.1  111616537-111617208
            745-809             JAXUCZ010000006.1  111629893-111629957
            810-986             JAXUCZ010000006.1  111633368-111633544
            987-1066            JAXUCZ010000006.1  111634416-111634495
            1067-1134           JAXUCZ010000006.1  111638316-111638383
            1135-1174           JAXUCZ010000006.1  111640306-111640345
            1175-1260           JAXUCZ010000006.1  111642305-111642390
            1261-1355           JAXUCZ010000006.1  111656657-111656751
            1356-3001           JAXUCZ010000006.1  111663494-111665139
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..3001
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /note="G patch domain containing 2-like"
                     /db_xref="GeneID:314325"
                     /db_xref="RGD:1308907"
     exon            1..72
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            73..744
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1507
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /codon_start=1
                     /product="G patch domain-containing protein 2-like"
                     /protein_id="NP_001128031.1"
                     /db_xref="GeneID:314325"
                     /db_xref="RGD:1308907"
                     /translation="MDELVHDLASALEQTSEQSKLGELWEEMALSPRQQRRQLRKRRG
                     RKRRSDFTHLAEHACCFSEASESSLDEATKDCREVAPLTNFSDSDDTVVAKRHPALSA
                     IVRGKQHSWHESDSFTENAPCRPLRRRRKVKRVASEVAASLQQKLKVSDWSYERGCRF
                     KSAKKQRLSRWKENTPWTSSGHGLCESAESRTFLSKTGRKERMECEAEGQKHGSDENM
                     SESETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGECVPGFTVHNLLPKWAPDHCTE
                     VERMDSGLDKLSDSTFLLPSRPAQRGYHGRLNRLPGAAARCLRKGRRRLAGKETGISS
                     LGTERIGHPVSDPRQTDFWLPSAGKRERHQFNPLSPLYSLDVLADASHRRCSPAHCSA
                     RQASVHWGPPCSRDIKRKRKPVASASFSSPSTGHPDVLEPAIPAQKPPDSEWLDGTSA
                     AEKTTAFPPATFFKMPQEKSSGCS"
     exon            745..809
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            810..986
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1066
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1134
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1174
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            1175..1260
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1355
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
     exon            1356..3001
                     /gene="Gpatch2l"
                     /gene_synonym="RGD1308907"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcagagaggg aaacccaggc tgggagctac ggccccgaag gcggcgccgg gtgcaagcga
       61 ctgcggcagc cgatgtggcc tcatggatga gctggtgcat gacttagcct cagccttgga
      121 gcagacatct gagcagagta agcttggtga gctgtgggag gagatggccc tgagccccag
      181 acagcagagg cggcagcttc ggaagcgccg aggccggaag cgccgttccg actttactca
      241 cctggctgag cacgcctgct gcttcagcga ggcctctgag tcaagtctgg atgaggccac
      301 caaggactgt cgagaagtgg ctccgctcac caacttcagt gactctgatg acacagtggt
      361 ggccaaacgg cacccagctc tcagtgccat cgttaggggt aagcagcact cttggcatga
      421 atctgactcc tttacggaaa atgcgccttg tcgacccctc aggcgccggc ggaaggtgaa
      481 gagagtggca tccgaggtgg ctgccagcct tcagcagaag ctgaaagtgt cagattggag
      541 ctatgagaga ggctgcaggt tcaagtctgc caagaagcag cgtttatccc gatggaagga
      601 gaatactccc tggacctcat ctggccatgg gctgtgtgaa tcagcagaaa gtcggacttt
      661 cctaagcaaa acaggaagga aagaaaggat ggagtgcgaa gcagagggac agaaacacgg
      721 ctccgacgag aacatgtccg aaagtgaaac tagcagtgtg tgcagcagca gcgacacggg
      781 gctcttcacc aatgatgaag ggcgtcaagg ggatgatgag cagagtgatt ggttttatga
      841 aggagaatgt gtccccggat tcactgtcca taaccttctg cccaagtggg ctcctgatca
      901 ctgcactgaa gtagaaagga tggactccgg actggataaa ctctcagatt ccacattcct
      961 tttaccttcc cggccagctc aaagaggata ccatggtcgc ctgaatcggt tgccaggagc
     1021 tgcagctcgg tgcctcagga aggggcggag aaggctggct gggaaggaga ccggcataag
     1081 cagcctggga accgagagga tcggccaccc cgtcagtgac ccccggcaga cggatttctg
     1141 gttgccatca gctgggaaaa gagaacgcca tcagtttaat ccactctctc ctctttactc
     1201 cctggatgtt cttgctgatg cctctcatcg aaggtgctca cccgcacact gctctgccag
     1261 gcaggcaagt gtacactggg gacccccatg ctcacgtgac attaaaagga aacggaaacc
     1321 tgtggcctca gcatcttttt ctagccctag tacagggcac ccagatgtcc tagagccagc
     1381 catcccagca cagaagcctc ctgactcaga gtggttggac gggacctctg cagcagagaa
     1441 aaccactgcc tttcctccag ccacattttt caaaatgcca caggaaaaga gctctggatg
     1501 cagctagagc ccagttacca atgggcgttg aacctctgta ttgtacagtc ttagtgttct
     1561 gatcagcagt cttggtcctg atgccaccag gaccaactcc tcttcacaca cagcagtcac
     1621 tcttctttta gaaaatgata tttggggaat cttcttttgt aaaatatcag ttttctttaa
     1681 gtgggcgggg catcctctgc tgtatttcct cctttttttt ttttttttct ttctttttcg
     1741 gagctgggga cggaacccag ggccttgcgc tcgctaggca agcgctctac cgctgagcta
     1801 aatccccaac ccctcctcct ttgttgatag cccaccattt gtgtccagct gctcccttac
     1861 agctgctgcc ccttggcagc tgagtctttg ttcctgaaaa tctagtaacc gctttgcata
     1921 ccttctgtgt agagctttta atatcactga tgaagtccta aattctcagc caactcgaaa
     1981 cacatccctg gatggaagtg tgtttgtgca gtaaggcttg ccgtagagcc ttggttcact
     2041 cagtgccagt aagacacatc aaccacattc tccgtttggg gccccagagg agacaccagc
     2101 agtatggttt gggaacttat tcccttgcct gcacatggtc tgaggggatt gccagcaacc
     2161 ccattgtacc tgactcatct tcatgctcag tgtttactga cagcggtcac agaggtcagt
     2221 gtactacagt gcaggtgggg gttgaggtgc ccagcaaaat agtggataat gttctgaccc
     2281 tggtctcagg ctttatatcc taagtgggat tccactgtta gtgttttata ggtcagtgac
     2341 cagtgataag cagaaactca tgctctgtta tctggataat ggttggttgg ggccatggtt
     2401 taggaaggaa agatgtcttt gtgacatgcc tttctatgtg gcgtgtttat gactgctcgg
     2461 ctgcaggtac agttgtatat atagtagtgt ccaaagttga tgctactttg tcaaggtgag
     2521 gcataagtga gtacctggag ctgctaggga agagccacat ttcccaaaag tgtcatccag
     2581 agtgcctgtc attcaggcct gctcaagagt gctctctttc tgtatcagct gagtgtgttg
     2641 actctggaac gtacgctagc gcttgctaaa tgctcgctgc cttggtcgtg tgggagagaa
     2701 gaaacctctc cttacgtcag ctgccaggtg gtctggtgcc tccttttcct aaagggtaat
     2761 tctccctcca cacggagtgc agtcagcatg tcccccttga gagtatgtcc atgtgagagg
     2821 atgctctgac tcgttagcac tgaggtgggc aggtggccag aatgtgagtc tgtttgcaaa
     2881 gggggacccg aagcttggtg tttacagatc gtgtggatgg ctgagagtgt atcagctgac
     2941 cataacaaaa atggtggagg ggggcacaga gagagatcgc agcatgagaa gggtgacacc
     3001 a
//
