LOCUS       NM_001108700            1647 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus G patch domain containing 11 (Gpatch11), mRNA.
ACCESSION   NM_001108700 XM_001064113 XM_343001
VERSION     NM_001108700.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ohta,S., Bukowski-Wills,J.C., Sanchez-Pulido,L., Alves Fde,L.,
            Wood,L., Chen,Z.A., Platani,M., Fischer,L., Hudson,D.F.,
            Ponting,C.P., Fukagawa,T., Earnshaw,W.C. and Rappsilber,J.
  TITLE     The protein composition of mitotic chromosomes determined using
            multiclassifier combinatorial proteomics
  JOURNAL   Cell 142 (5), 810-821 (2010)
   PUBMED   20813266
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108700.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ225505.1, SRR26643298.34266.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JAXUCZ010000006.1  21995283-21995381   c
            100-223             JAXUCZ010000006.1  21994022-21994145   c
            224-295             JAXUCZ010000006.1  21993005-21993076   c
            296-522             JAXUCZ010000006.1  21991729-21991955   c
            523-564             JAXUCZ010000006.1  21990982-21991023   c
            565-685             JAXUCZ010000006.1  21990048-21990168   c
            686-776             JAXUCZ010000006.1  21989841-21989931   c
            777-893             JAXUCZ010000006.1  21988914-21989030   c
            894-975             JAXUCZ010000006.1  21987257-21987338   c
            976-1647            JAXUCZ010000006.1  21985202-21985873   c
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..1647
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /note="G patch domain containing 11"
                     /db_xref="GeneID:362685"
                     /db_xref="RGD:1311424"
     exon            1..99
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            100..223
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            224..295
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     CDS             249..1031
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /note="coiled-coil domain-containing protein 75;
                     coiled-coil domain containing 75"
                     /codon_start=1
                     /product="G patch domain-containing protein 11"
                     /protein_id="NP_001102170.1"
                     /db_xref="GeneID:362685"
                     /db_xref="RGD:1311424"
                     /translation="MAEEEDYMSDSFINVQEDVRPGVPMLRQIREARRKEEKQQQANL
                     KNRQKSLKEEERERRDIGLKNALGCENKGFALLQKMGYKSGQALGKTGDGIVEPIPLN
                     VKTGKSGIGHESLLKRKAEERLESYRRKIHMKNQREEKAAEEFRMRLKSKQDELRLEG
                     DLRRSQRACQQLDAQKNIQVPREAWYWMRPEEETEEEEEEKEEQDEDKCPSEDLSVLE
                     KLQILTGYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADHD"
     exon            296..522
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            523..564
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            565..685
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            686..776
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            777..893
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            894..975
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1647
                     /gene="Gpatch11"
                     /gene_synonym="Ccdc75; RGD1311424"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttcggtctc aaggtatgcg gactcccggg agaatgactg aggtcggtgc aagttggccg
       61 tgactgccga tcatacatac cgtcagctgc gtcccatcca gcaagatcac aagcctgtat
      121 tcttcgtggt tgtgaacgaa ttatttagcc aaatcgagcc tcaattttcc catctggaaa
      181 gtggaactga ttgttcgtat ctactgggct gttcatgagc taggtggtgt ggccatagga
      241 aggagaacat ggcggaagaa gaggactata tgtcagattc cttcattaac gttcaagaag
      301 acgtcagacc cggcgtgccc atgctgaggc agatccgaga agcccggcga aaagaagaaa
      361 agcaacagca agcgaatctg aaaaataggc agaagagcct gaaggaggaa gaacgggaaa
      421 ggcgtgacat tgggctgaag aatgcgctgg gctgcgaaaa caaagggttc gctttgctcc
      481 aaaagatggg gtacaagagt gggcaggctc tgggcaagac tggagatggt attgttgaac
      541 caattcccct caatgtcaag acaggcaaaa gtggcatagg tcacgagtcg ttactaaagc
      601 ggaaagcaga ggagaggctg gagagctaca ggaggaagat tcacatgaaa aaccagcgtg
      661 aagaaaaggc ggccgaggag tttcggatgc gactgaaaag taagcaggac gaactgaggc
      721 tcgaaggaga cctgagaaga agccagcggg cctgccagca gctggatgcc cagaagaata
      781 ttcaggttcc cagggaggcg tggtactgga tgaggcctga agaggagact gaggaagaag
      841 aagaggaaaa ggaagagcag gatgaagaca agtgcccaag tgaagatctg agtgtgctag
      901 aaaaactgca gatcctcact ggttacttac gagaagaaca tctgtattgc atctggtgtg
      961 ggacagccta tgaagataaa gaagacttat cttccaattg cccaggacca acctctgcgg
     1021 atcatgactg agattgttcc caataaagta aaattgttta tatgggtggg gaaagaaggc
     1081 ctttgtatag cacttaattc tttcagaagc gggttctact ttggataaaa ttgttcactg
     1141 atttaggtaa atgtcacttc caaatacaag tatcatagac atgaacaatt actttacggt
     1201 ggtatcatga tgcttataga gtttaagggt cccgacaggt aacatactta gtccctcttt
     1261 actttgggta aattgagaag atcaggggat ccagaagaaa tcagtggtct gctttagggc
     1321 gtgagatggg ccttcatggt agcaggactg ccagacctgt ggaagctcct gagttcagtc
     1381 accagcacca cgagttaagc tgttggcatg aagctgggat acagaacaag gccagctctt
     1441 tcgaatcaga ctaccaaata gttatttgga gaaatggcat acctgtcctc tacctgtgga
     1501 gccaactttg tgttccaggg ccggtgtctt gaagaagtag tttcatcctg gtttgtcttt
     1561 cagagtaaac acagctgtta aaaataccag atagcatttt ctagacgtta gttttctgga
     1621 gtaggggcac aggctgagta gtccctg
//
