LOCUS       NM_001106246            3073 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus G patch domain containing 1 (Gpatch1), mRNA.
ACCESSION   NM_001106246 XM_001079698 XM_214906
VERSION     NM_001106246.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3073)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473979.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_214906.4, XM_001079698.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3073
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3073
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /note="G patch domain containing 1"
                     /db_xref="GeneID:292810"
                     /db_xref="RGD:1308935"
     exon            1..102
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..2822
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /codon_start=1
                     /product="G patch domain-containing protein 1"
                     /protein_id="NP_001099716.1"
                     /db_xref="GeneID:292810"
                     /db_xref="RGD:1308935"
                     /translation="MAALDSDSEEDLISYGTGLEPLEEGERPKKPIPLQDQTVRDEKG
                     RYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSALGPEDFMDEEDLSE
                     FGIAPKAIVTTDDFASKTKDRIREKARQLAAAAAPIPGATLLDDLITPAKLSVGFELL
                     RKMGWKEGQGVGPRVKRKARRQKADPGVKIYGCALPPGGSEGSEDEDDDYLPDNVTFA
                     PKDVMPVDFTPKDNVHGLAYKGLDPHQALFGMPGEHLNLFGGASEGTSHLLGDVGLSK
                     GRKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPKQYKNHK
                     EPERDLRYVGKILEGFSLASKPLSSKKIYPPPELPRDYRPVHYFRPVVAATSKNAHLL
                     QVLSESSGKAGQDMGTHSRHQLNASKRGELLGEMPVQGSATSVLEFLSQKDKERIKEV
                     KQATDLKAAQAKARSLAQSASSSRAQASTPDPGHSSWHLALGSGTVTTRASNFKPFAK
                     DPEKQRRYEEFLVHMKKGQKDALERCLDPNMTEWERSREREEFARAAQLYVSSNSTLS
                     SRFTHAKEEDDSDQVEVPRDQENDLSDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFN
                     VPDPYPGSTLVGLPRVKRDKYSVFNFLTLSEPASLPTAPVPSEKAPQQRGPDKSRKPS
                     RWDTSKQEKKEDSISEFLSQARSKVGPSKQESSALGSKEEQASEPHPDMTVDKAVDAQ
                     PDREGSRPSMDLFKAIFASSSDEKSSSSEEEQDDSEDSQEHTEEASLKGSQEAAVGET
                     SLIHAAEQEPGEPATPFPIQKVQIDEREEFGPRLPPVFCPNVRQKLEIPHKEKPKKSK
                     ERHRSKKEHRRKREKKKKHKKHKHKSKQKNKKSEKNSSSESTDSSDSGSDAGGSTELS
                     PQELLRRLKCLPLRRQ"
     exon            103..237
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            238..323
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            324..484
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            485..582
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            583..641
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            642..884
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1032
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1112
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1317
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1318..1614
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1615..1793
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..1921
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1922..2058
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2059..2222
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2223..2436
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2437..2544
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2545..2642
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2643..2791
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
     exon            2792..3073
                     /gene="Gpatch1"
                     /gene_synonym="Gpatc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgagggggcg gagcccggaa gggagcagga tggcggcgct ggacagtgac agcgaggagg
       61 atctgatcag ctatggaacg ggcctggagc ctctggaaga aggtgaaaga ccaaagaaac
      121 ctattcctct tcaagaccag actgtcagag acgagaaagg aaggtacaag cgctttcatg
      181 gagcctttag tggtggtttc tccgctggtt acttcaatac cgtcggctca aaggaaggat
      241 ggacaccctc tacctttgtg tcttcaagac agaacagagc ggacaaatct gctcttggac
      301 ctgaggattt tatggatgaa gaggatctta gtgaattcgg gatagcgcct aaagcaattg
      361 ttaccacaga tgattttgct tccaaaacca aagacagaat acgggagaag gccaggcagc
      421 tggcagctgc tgcagcccct attcctggag ccacgctgct tgatgatctc atcacgccag
      481 caaaattgtc tgttggcttt gaattgctaa gaaaaatggg ttggaaggaa ggacaaggag
      541 ttggccctcg ggtgaagaga aaggcacgcc gacagaaagc ggatcctggt gttaagatct
      601 atggctgtgc tttgccacct ggaggctctg aagggtctga ggatgaagat gatgactact
      661 tgcctgacaa tgtgactttt gctcctaaag acgtcatgcc tgtggatttt acacctaaag
      721 ataatgtaca tgggttggct tacaagggcc tggaccccca ccaagcattg tttggaatgc
      781 caggagaaca cctgaatctt tttggtggag catctgaggg gaccagccat cttcttggag
      841 atgttgggct gagtaaagga agaaaactgg gcatttctgg ccaggctttt ggtgtaggtg
      901 ccctggaaga ggaagatgac gacatctatg ccacggaaac tttatccaag tatgacactg
      961 tgctgaagga cgaggagcct ggagatggcc tctatggctg gacagctccc aagcaataca
     1021 aaaatcacaa agaacccgag agagatcttc gatatgttgg caaaattttg gaaggatttt
     1081 ccttggcttc taaaccttta tcttcaaaga aaatttatcc accccccgag ttgcccaggg
     1141 actaccgacc agtgcattat ttcagacctg tggtcgctgc aacgtccaag aacgctcact
     1201 tacttcaggt gttatcggag tcatctggga aagcagggca agacatgggc acacacagta
     1261 ggcatcaact caatgcctcc aagcgggggg agctgctagg agagatgcct gttcaagggt
     1321 cagcgacttc agtgttggag tttctgtccc aaaaagacaa agaaagaatt aaagaagtga
     1381 agcaagcaac cgacctgaaa gccgcccaag ccaaggccag gagtctggcc cagagtgcgt
     1441 caagcagcag agcacaggcc tccacaccag accctgggca cagctcatgg catctggccc
     1501 tgggcagtgg gacagtcacc accagagcca gcaacttcaa gccttttgcc aaagatccag
     1561 aaaagcagag acgatatgaa gagttcttag tacacatgaa gaagggtcag aaagatgctc
     1621 tggagcgatg cctggacccc aacatgaccg agtgggagcg aagccgagag cgggaagagt
     1681 ttgctcgggc agcccagctc tacgtgtcct ccaactccac cctgtcctcc aggttcactc
     1741 acgccaagga ggaagatgat tcagatcagg ttgaagttcc tcgagaccaa gagaatgacc
     1801 tcagtgacaa gcagtcagct gtgaagatga agatgtttgg gaagctcact cgagatacgt
     1861 ttgaatggca ccctgacaag cttctgtgta agaggtttaa cgtccctgac ccgtatccgg
     1921 gctcgacttt agttggctta cccagagtga agagggataa atactcagtc ttcaacttcc
     1981 tgacgctctc agagcctgcc tctctgccca cagctccagt acccagtgaa aaagccccgc
     2041 agcaacgggg tccagacaaa tccaggaaac catcccgatg ggacacatcc aaacaggaga
     2101 agaaagagga ttccattagc gagtttttaa gtcaggctag atcaaaagtt ggaccttcaa
     2161 aacaagaatc cagtgcctta ggaagcaaag aggaacaggc ctctgagcca cacccagaca
     2221 tgactgtaga caaagctgtg gatgcacagc cggacaggga aggtagccgt ccttccatgg
     2281 atttattcaa ggccatcttt gccagttcct ctgatgaaaa gtcctcatct tcagaggagg
     2341 agcaagacga cagtgaggac agtcaagagc acaccgagga ggccagcctt aaaggttccc
     2401 aggaggctgc tgtcggggag acctctctga tccatgctgc tgagcaggag cctggtgagc
     2461 ctgcaacccc cttccccatc caaaaggtac agatcgatga acgggaagag ttcgggcctc
     2521 ggctgcctcc tgtcttctgc cccaacgttc gacagaaact cgagatacct cacaaagaga
     2581 aacccaagaa aagcaaagaa agacacagga gcaagaagga acacagaagg aagagagaga
     2641 agaaaaagaa acataagaaa cacaaacaca aaagtaagca aaagaataag aaatcagaaa
     2701 aaaatagcag ttctgagagt acagatagca gtgacagtgg gagtgatgca ggagggtcca
     2761 cagagctgtc cccgcaggag ctgcttcgaa gactgaagtg tctcccccta agaaggcagt
     2821 gatggagccc ttccctggcc tgtctcagtc tggaggctcc tccgcgatgg aagtccgttg
     2881 atttcccagt tcatacattg tgcaaatgta tttatatgta aattccttct gtaaaataat
     2941 cttttaaacc ttgacatttc aaaggctgcc tgaaaggttg cagaaattga tttctatttt
     3001 taacctcagt tcatgttaga gggataaaag actgaacagt ttaattaaag tgactttttt
     3061 taaaaaaaaa tat
//
