LOCUS       XM_039097279            3977 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glycoprotein VI (Gp6), mRNA.
ACCESSION   XM_039097279
VERSION     XM_039097279.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097279.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3977
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3977
                     /gene="Gp6"
                     /note="glycoprotein VI; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 18 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:684555"
                     /db_xref="RGD:1589130"
     CDS             120..2465
                     /gene="Gp6"
                     /codon_start=1
                     /product="platelet glycoprotein VI"
                     /protein_id="XP_038953207.1"
                     /db_xref="GeneID:684555"
                     /db_xref="RGD:1589130"
                     /translation="MGLGAALLGLVCLIEQRIWAHYGPSPYPSIWAVPGTVISTGSTV
                     TVFCRSPPGVTNMRLQNFLHNEIWYDKTPQGDQEVFEFSLQNVIHTHAGIYYCSYYNG
                     GKWSQTSDKLELIVTGAYKEKPSLTIDSGPQGFSKRNVTLVCHTHHFFDLFILCRDGN
                     ASFPRNCLQQDHNTFLISPVSPGYKRTYRCFVSPKVNSYLWSLPSDPLELLVPGPSVS
                     PIVVWVTVAAVCFLIFFLLLLYLCHHWAKCKTSSAKTRTQVKYKSSSPAMDNDEKIKY
                     DELECIQPENYCQVDTKLSAVEDSKEVTYAQLCQEIFLENMDSLPSNTLHHMSTQTCV
                     YATLRLSQEESQSYCLTLLEARLSALLETGFFPVGYGTQFMPLQADRWLTYSWQEEIS
                     DGFKSCVQVILLKKWPCLDDSLFFFVLMTLNQESWGWYKQGGGAFFTLGTSCSYVPGI
                     YNFPTWSHSAGLGCRTMSPASLTFFCIGLCVLQVIQAQHGPLPKPSLQAQPSSLVPLG
                     HPVTLRCLGPSDADLYRLEKVKPGKLIFIDQDFLFIPIMEINNAGRYRCSYQNESHWS
                     LPSDQLELIATGVYSKPSLSAHPSSAIPPGRDVTLKCQSQYSFDEFVLYKEGDTRPYK
                     RPEKWYRANFPVITVTAAHSGTYRCYSFSSSSPYLWSAPSDPLVVVVTGPSATPSQVP
                     TEVPSPMTEASRRPSMLLTNKISTTEKPMNITVSPEGPSPPFGFAHQHYAKGNLVRIC
                     LGVMIIMFLVGFLAEDWHSRKKRLQHRIRAMQRPLPPLPLA"
ORIGIN      
        1 taattcttga cagggtttcc agaaaccagt ctgctctatc cgatgggtgt gttcccctgt
       61 gcaggcagtg tcactagttc tctgtgtgtg gatgtggaga tctggcacaa atcattgtca
      121 tgggccttgg ggctgctctt cttggacttg tgtgtttaat agagcagagg atctgggcac
      181 actatggacc atctccttat ccttcaatct gggcagtacc aggaactgtg atttccacag
      241 gcagtactgt gactgtcttc tgcaggtccc ctccaggagt gaccaacatg cgtctacaga
      301 attttttaca caatgaaata tggtatgata aaaccccaca gggagaccag gaggtttttg
      361 agttcagtct gcagaatgtg atacacaccc atgctgggat ttactactgt agctattaca
      421 atggaggcaa atggtcacaa actagtgaca aattggagtt gattgtgaca ggtgcttaca
      481 aggagaaacc atctcttact attgattcag gaccccaggg attctcaaaa agaaatgtga
      541 ctctggtctg tcacacacat catttctttg acctcttcat cctctgcaga gatggaaatg
      601 cttcctttcc tcggaactgc ttacaacagg accataacac attcctcatc tcccctgtga
      661 gcccagggta caagaggacc tacagatgct ttgtatctcc caaagtcaat tcctatttgt
      721 ggtcattgcc tagtgacccc cttgagcttt tagtcccagg tccatctgtg tctcccattg
      781 tggtttgggt tacagttgct gctgtctgct ttctcatctt cttcctcctc ctcctctacc
      841 tctgccacca ttgggctaaa tgcaagacca gcagtgctaa gaccaggacc caagtgaaat
      901 ataagagctc cagcccagcc atggacaacg atgaaaaaat taaatatgac gaattggaat
      961 gcattcagcc tgagaactac tgccaggtgg acacaaagtt gtctgcagta gaagactcaa
     1021 aggaggtgac ttatgcccaa ctatgccaag agatcttcct ggagaacatg gattcacttc
     1081 cctccaatac tcttcaccac atgtctacac agacctgtgt gtatgccaca ctcagattat
     1141 cccaagagga gagccagagc tactgcttga ctctcctgga agctcgtttg tcagcacttc
     1201 tggagactgg cttttttcca gtgggatatg ggacacagtt tatgcccctc caggcagaca
     1261 gatggctgac atacagctgg caggaagaga taagtgatgg ctttaaaagt tgtgtgcaag
     1321 tcatcctact gaagaaatgg ccctgtcttg atgactctct cttttttttt gtcttgatga
     1381 ctctcaatca ggaaagctgg ggctggtaca agcagggagg aggggcgttc ttcacccttg
     1441 gcacatcctg ttcctatgtt ccaggcatct ataactttcc tacttggtca catagtgcag
     1501 gactgggctg cagaaccatg tctccagcct cactcacttt cttctgtatt gggctgtgtg
     1561 tactacaagt gatccaagca cagcatggcc cactccccaa gccttctctc caggctcaac
     1621 ccagttccct ggtgcccctg ggtcatccag tcactctgag gtgcctgggg ccttcagatg
     1681 cggatttata tcgtctggag aaagtgaaac ccgggaagtt gatcttcata gatcaagact
     1741 ttctcttcat tccaatcatg gaaataaata atgctggacg ctaccgctgc tcatatcaga
     1801 atgagagtca ttggtctctc ccaagtgacc agcttgagct aattgctaca ggtgtttact
     1861 ctaagccctc actttcagct catcccagct cagcaatccc tccaggcagg gatgtgactc
     1921 tgaagtgcca aagccaatat agttttgacg aatttgtttt atacaaagag ggggatacta
     1981 ggccttataa gagacctgag aaatggtacc gggccaattt ccccgtcatc acagtgactg
     2041 ctgctcacag tgggacttac cggtgttaca gcttttccag ctcatctcca tacctgtggt
     2101 cagcaccgag tgaccctcta gtagttgtgg ttactggacc ctctgccact cccagtcagg
     2161 tacccacaga ggtaccatct cctatgacag aagcctccag gagaccttcc atgttactca
     2221 caaacaaaat atctacaact gaaaagccta tgaatatcac tgtctctcca gaggggccaa
     2281 gccctccatt tggttttgct catcagcact atgccaaggg gaatctggtc cggatatgcc
     2341 ttggtgtcat gattataatg ttcttggtgg ggtttctggc agaggattgg cacagtcgga
     2401 agaaacgcct acaacacagg atcagagcta tgcaaaggcc actgccacct ctcccactgg
     2461 cctagaaata acatggcttt cagcataggg attgaccaga tgctcataac catgggcatc
     2521 accattagag ccacaggcat agacagttta tataaaaaat gagtgtggag aataaatatg
     2581 aggcagagca aacaaggtag gatggagggt catgagcttt attgatcaat caagcagttg
     2641 agccaatttc tactttgccc aaagaactcc acatgggatg gaaaagtcta agggaagttt
     2701 cttctgatat cttgcacatt agatatctta atagatctgt gtaatggcct ttcttcaacc
     2761 ttctcttaca tggattcaat aataatttac aaaatgcctg tttttccaca gctgacctgc
     2821 tccatatttg tgccaatcac ttgttctcta atagtctgta tactctgata gtccatagct
     2881 ttagccttta ccctaacctc atcttaagcc atagtcatgt ctacttttta gaagggaaaa
     2941 gtgccatcca gaaaattggg tagggtgtta ttttttatta ttatataatt attcatatga
     3001 tcagccagtc tttttctttt gtttatagta gatatatttt gaaactcaaa atggatgcct
     3061 aaaactatag aaagtaccaa atcctgtagc cattgtgatt ttcctacata tattcttgca
     3121 tttgagtcca ttaaaataag aagtatctga ctagaatatc cgtgacagtt gatccaaaca
     3181 agatggctat tacatcttca caaataggca ggcaatgtat acatatccac aatggtgatt
     3241 tattttcgga aatgtaatag tgtgggattg tgtaaaactt ttatttctac atattttcca
     3301 cttaatattt tcaacctaag gttgaataca tgtgagggaa accatatgaa acaaaaccac
     3361 acaggagggg acactcttga aaaccgtatc tgtgacttcc ctgtattaga aagagtctta
     3421 actttatctg aaaggccagc atactaaaat tcagataggt tggtaataat tatttctgga
     3481 agatgaggat tgtgaaggga atgatggaag tactattaaa gagttcagga caatatattt
     3541 tttagtgtga tgaagatatt tttgaactag aaagaggtaa tggttgtcca atattgttag
     3601 tgtgctagga gccattgacg agttcactta aaacaactag taaggcagct gagaaaagta
     3661 gttagtgcta tactagcact tgggaggaaa ggtaagagga tattgagttc aaggctggct
     3721 ttgtactaca tatgattccc catctcaaaa acaaatgcaa tcttgtgata acaatgtatt
     3781 gtgtatttaa aggacagaat aattttgaat gttttcaaca gaaaaagata tattatataa
     3841 tgtacatatg tataccccat aaaatgtaca attttagttt ttgtgtgtta aatattgatt
     3901 ttagcagagg gtaatttatg ttttatgaat catatcccca aaaatattaa aagaaaaacc
     3961 tgtctttttg gtatcca
//
