LOCUS       NM_001271283            3896 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus golgi membrane protein 2 (Golm2), mRNA.
ACCESSION   NM_001271283 XM_001077041
VERSION     NM_001271283.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001271283.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.18104.1,
                                           SRR26643287.8828.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-569               JAXUCZ010000003.1  129280738-129281306
            570-624             JAXUCZ010000003.1  129308854-129308908
            625-727             JAXUCZ010000003.1  129311350-129311452
            728-818             JAXUCZ010000003.1  129313164-129313254
            819-960             JAXUCZ010000003.1  129316681-129316822
            961-1041            JAXUCZ010000003.1  129317446-129317526
            1042-1140           JAXUCZ010000003.1  129322718-129322816
            1141-1311           JAXUCZ010000003.1  129324019-129324189
            1312-1479           JAXUCZ010000003.1  129339326-129339493
            1480-3896           JAXUCZ010000003.1  129347479-129349895
FEATURES             Location/Qualifiers
     source          1..3896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..3896
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /note="golgi membrane protein 2"
                     /db_xref="GeneID:362204"
                     /db_xref="RGD:1305985"
     exon            1..569
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..1550
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /note="protein CASC4; gene associated with HER-2/neu
                     overexpression; cancer susceptibility candidate 4; cancer
                     susceptibility 4"
                     /codon_start=1
                     /product="protein GOLM2"
                     /protein_id="NP_001258212.1"
                     /db_xref="GeneID:362204"
                     /db_xref="RGD:1305985"
                     /translation="MVGFGANRRAGRLPSFVLVVLLVVIVVLAFNYWSISSRHVLLQE
                     EVAELQGQVQRTEVARGRLEKRNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLG
                     KRCEDDKVKLQNNISYQMADIHHLKEQLAELRQEFLRQEDQLQDYRKNNTYLVKRLEY
                     ESFQCGQQIKELRAQHEENIKKLADQFLQEQKENHKIQSNDGKELGRNDHVAPKNIPN
                     VPENDANKNEDPSSNHLPHGKEQVKRVGDAGMPGVEENDLAKVDDLPAALKKPPVLAS
                     QHESHQTISHLLTGQPLSANMAAGSHLNQNENPSTSKQNPSNPLQHIIPGPNLEREPR
                     IQTDTIKQATKDRANDFHKLKQSRFFDENESPVDPQHGSKLADYNGDDGNVGEYEADK
                     QAELAYNEEEDGDGGEEDVQDDEERELQMDPADYGKQRFSDVL"
     exon            570..624
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            625..727
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            728..818
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            819..960
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1041
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1140
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1311
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1479
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..3896
                     /gene="Golm2"
                     /gene_synonym="Casc4; RGD1305985"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcatcggtc gctgggtacc agcgccggct tctcccgctt ccctgcggcg agcgccggct
       61 ggccttcgat tcttggaggg ggcgcggcgg gggcgcagag ggggcgggga agacccgcga
      121 cgccccgccc ccatccgcgc tccggcggct cggcccgtcc cttggggacc gggtcccgag
      181 gccgctcgga gagcaatccg gcgctgcccg caggtgtcgg cggcggctga gccaccggcc
      241 tcatggtggg tttcggggcc aaccggcggg cgggccgcct gccgtccttc gtgctggtgg
      301 tgctgctggt agtcatcgtt gtccttgcct tcaactactg gagcatctcc tcccgccacg
      361 ttctgcttca agaggaggtg gccgagctgc agggccaggt ccagcgcacc gaggtggccc
      421 gtgggcgcct ggagaagcgc aattcggacc ttttactctt ggtggacacg cataagaaac
      481 agatcgacca gaaggaggcc gactacggcc gcctcagcag ccggctgcag gctagggaag
      541 gcctggggaa gagatgcgag gatgacaagg ttaagctaca aaacaacata tcatatcaga
      601 tggcagacat acatcattta aaggaacaac tggctgagct tcgtcaggag tttcttcgac
      661 aagaagatca gcttcaagac tacagaaaga ataacacata ccttgtaaag cggttagagt
      721 acgagagttt tcagtgtggc cagcagatca aggagttaag agcacaacat gaagaaaata
      781 ttaaaaaatt agcagatcag tttttgcagg aacaaaagga gaaccataag attcaatcaa
      841 atgatggaaa agaattgggt agaaatgatc atgtagcacc taaaaatatt ccaaatgtcc
      901 ctgaaaatga tgcaaataaa aatgaggacc cctcaagcaa tcatcttcca catgggaaag
      961 aacaagtcaa acgagttggt gatgcaggga tgcctggagt agaagagaat gatctagcaa
     1021 aagtagatga tcttcctgct gctttaaaga agccccctgt gttagcttct caacatgaaa
     1081 gtcatcaaac catatcccat cttctaactg gacagcctct ctcagcaaac atggctgcag
     1141 gttcacatct aaaccagaat gaaaatccta gtacttcaaa acagaaccct tcaaatcctc
     1201 ttcagcacat aattccaggc ccaaacctgg agcgagaacc cagaattcaa acagacacga
     1261 taaagcaggc caccaaggac agagccaatg atttccacaa gttgaagcaa agccggttct
     1321 ttgatgaaaa tgagtcccct gttgatccgc agcatggctc taaactggcg gattataatg
     1381 gggatgatgg taacgtaggt gagtatgagg cagacaagca ggctgagctg gcttacaatg
     1441 aggaagaaga tggtgatggt ggagaggaag acgtccaaga tgatgaggaa cgagagcttc
     1501 agatggatcc tgcggactat ggcaaacagc gcttcagtga tgtcctttaa gtctaaggga
     1561 ttcccgaaac ccaagtgctg tgcagcgagg gagcggatca tctctacctg tcaattttga
     1621 cttttgttat aaaaatcagt tgtatcagtt gtaaagatac attgagatag atttaaggaa
     1681 actttaatga aggaatgtac ccatgtacat atgtgaactt ttcctattat attatcaaag
     1741 cagattcttt ttttcttttt tttttttggt tatgacacag ctgggccaaa aacagttaat
     1801 ctttgcattt gaaagcaaac taatgtaaat ttcacatttt attgagccta attttttttc
     1861 acaaagagaa acaggaacaa atggttgtac aggttctatg ctgcacatag tataaccaca
     1921 atgagaagtt attcagctga aagtctacac taatgcagtt ttgttacccc ataggtgtcc
     1981 tctactaccc ctcatttaac acgctctaag aagtttgcta gaatagttac acaggagtgg
     2041 ggaggctgga tgccaaacag tgggcaaatg tacagaacga cctcccaccc ttttacctta
     2101 catgggcact gctgtgagtg ggctgaggcc taatgaaagc ctaggtcatc aaaaccatat
     2161 tatcagttgt tcctttcttg gttcttgaag ttgtggaatg catggttgac aatgtatttt
     2221 tatttttcaa gtaataccag aactgtttaa ctctggttag cactggctaa agttctttat
     2281 attttcagag ttcagctggt gattatattc atcagttatg tgtcagatcc tgaaagagac
     2341 taagtccact ttgaaatgag tctactacaa tcagtacagc aaagcttttc tggtagtttt
     2401 aatgatcgta tttgattaga cttttccaga actactaagt aagggatttt aacaggtttt
     2461 tattaatgaa cagatgaata gaagtaccgt gaagttcaca gctattttac tgaaatagct
     2521 ggaaactttg taataaagat gagaatttgt aattaatgtt agttaagaac ccatttgcta
     2581 gacttacaga attattttca gtgcattgtg tcttctgaca tttttcatta ggatatataa
     2641 gctagctaat ccttgtttac tgatttcaag cacttttaat tttttgtgtt ccctaaatat
     2701 taaaggtgtt gatcataagg aggaaatgta aggctgttaa ccccaaggct gttattccca
     2761 ttttttttga atggctgctg ttaattgcac ataaacatga aatactgact atagctcaga
     2821 tatgtgaggc ctgggtttgc ttctaatact gaaaaacagc aaacaagtga gcagacgtga
     2881 aaagtcccca cactgaggct ctaatcaaaa tactcacaga agtactgttc acctgctaag
     2941 atctgaagtt cttacagttc agtccaaagt tatttaatgg ccaggaaaag atggaataat
     3001 ttattaaaat ttgtttttct actctatcac actctaaatc actgggcatg caccacatct
     3061 gcaatcctac tgttgaggaa acagaaacag gtgtgttcct gaggctcact cagcagccat
     3121 tctggcctaa ttaccaagtt ccaaatccca ataagggaca gttgtccctg agacacccca
     3181 ccacacacac acacacacac tctctctctc tctcacacac acacacacac acacaccaag
     3241 aaactaaaca gttcatgctt ttgttgtcag taaacttagg cctgcagtag aaagtataat
     3301 tcacgtggaa atgcagtcaa aggggagtgg tgcacaacca caggcattag cagcaggagc
     3361 agaacctacg aatacctagt gacactccat acttgatact gtagaactgt acagacaaag
     3421 cctaaagatg cctgctggtt ccactgtcat aaaaacggtc actttgttct atggtaccca
     3481 tctttataca gcagaagctt caattagcag cctagacatt ttataaactg aagaatcttg
     3541 gaccaattga taatatttct gactgtatta acattttagt gctataaaat actatgtgga
     3601 tctctttaaa ttgtgacatt ctacagtctg tattagacat gctgttttgt tctgtttaca
     3661 gtgttttact tctgccttaa gatttacaga tgtttttctc attttgtttt attttaatat
     3721 atttttgccc tgaattaagt gttaatttga tgggaactct gcttttaaaa aaatcatcac
     3781 tctctgggtt ctaataaatt aaaagttaaa ctgtttcaca gttttgattt tatataaaat
     3841 tacatgaata tattattcat tgaaatttga ataaatgtta tcatttattt taggtt
//
