LOCUS       NM_001399468            4360 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus golgi integral membrane protein 4 (Golim4),
            transcript variant 1, mRNA.
ACCESSION   NM_001399468 XM_006232499
VERSION     NM_001399468.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4360)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 4360)
  AUTHORS   Linstedt,A.D., Mehta,A., Suhan,J., Reggio,H. and Hauri,H.P.
  TITLE     Sequence and overexpression of GPP130/GIMPc: evidence for saturable
            pH-sensitive targeting of a type II early Golgi membrane protein
  JOURNAL   Mol Biol Cell 8 (6), 1073-1087 (1997)
   PUBMED   9201717
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 7, 2022 this sequence version replaced XM_006232499.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.10105.1,
                                           SRR26643292.9105.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-831               JAXUCZ010000002.1  163031071-163031901 c
            832-906             JAXUCZ010000002.1  162973577-162973651 c
            907-956             JAXUCZ010000002.1  162972214-162972263 c
            957-1010            JAXUCZ010000002.1  162970412-162970465 c
            1011-1161           JAXUCZ010000002.1  162968695-162968845 c
            1162-1244           JAXUCZ010000002.1  162965802-162965884 c
            1245-1328           JAXUCZ010000002.1  162964960-162965043 c
            1329-1490           JAXUCZ010000002.1  162960155-162960316 c
            1491-1793           JAXUCZ010000002.1  162957192-162957494 c
            1794-2041           JAXUCZ010000002.1  162955973-162956220 c
            2042-2124           JAXUCZ010000002.1  162955084-162955166 c
            2125-2234           JAXUCZ010000002.1  162953585-162953694 c
            2235-2402           JAXUCZ010000002.1  162949589-162949756 c
            2403-2471           JAXUCZ010000002.1  162949192-162949260 c
            2472-2543           JAXUCZ010000002.1  162941594-162941665 c
            2544-4360           JAXUCZ010000002.1  162939429-162941245 c
FEATURES             Location/Qualifiers
     source          1..4360
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q32"
     gene            1..4360
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /note="golgi integral membrane protein 4"
                     /db_xref="GeneID:310526"
                     /db_xref="RGD:1310948"
     exon            1..831
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     CDS             645..2690
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /note="isoform 1 is encoded by transcript variant 1;
                     GIMPc; golgi integral membrane protein, cis; golgi
                     phosphoprotein 4"
                     /codon_start=1
                     /product="Golgi integral membrane protein 4 isoform 1"
                     /protein_id="NP_001386397.1"
                     /db_xref="GeneID:310526"
                     /db_xref="RGD:1310948"
                     /translation="MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYLELQTQLRKAE
                     AVALKYQQHQDSLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNK
                     GRQDSNSRYSALNVQHQMLKSQHEELRKQHSDLEEEHRKQGEDFSRAFNDHKQRYLQL
                     QQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLE
                     DHKRALAAAQTQVAEYKQLKDTLNRIPSFRNPDPAEQQNVTFTHGTHPPQGYNVREKL
                     TGELQEGQQNHDAMPRRMEEKPLSSMQKEAGFQALEEQNQVEPREPEGRQVEEEHRKA
                     LEEEEMEQVGQAEHLEEEHDPSPEEQDREWRDQRRQNAAHLLDGRPQAEIEHSTKAAT
                     NFRSPYEEQLEQQRLAARRDEEAQRLREHQEALHQQRLHGQLLRQQQQQQYLAREMAQ
                     QKQADHEEGQQQYQLRQQAHSDAVENDVAQGAEDQGIPEEEGGAYDRDNQRQDEAEGD
                     PGNRQEFHEPGHQEGDPEAEADRAAAQDINPADDPNNQGEDEFEEAEQVREENLPEES
                     EERKQSEAKQGNVEMDEHLVMAGNPDQQEDNVDEQYQEEGEEEVQEDLTEEKKRELEH
                     NAEETYGENPDDKNNDVEEQGVPNRAHPKGRQEHYEEEEDEEDGAAVAEKSHRRAEM"
     exon            832..906
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            907..956
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1010
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1161
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..1244
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1328
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..1490
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1793
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..2041
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2124
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2125..2234
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2235..2402
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2403..2471
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2472..2543
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
     exon            2544..4360
                     /gene="Golim4"
                     /gene_synonym="Golph4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcccggaa tcccgttggc catgatagcg gggccgtggg tgacacgtaa gttgggtggg
       61 aggtggcggg cggctggagc tgccagatca gtgacaccag cccaccgccc cccttaagca
      121 gactagacca accagtcccc atctctttac tatcccgggg gaccgtacgt ggggactcct
      181 ctgggagcca gctccttttg ttgggcgcgc gtcccctacc agtggtagcg acaaagtcca
      241 gccgcgggag ccggcgcgag gggcggggtc tgacggtggg gacagcgagg ccaaaaagtg
      301 gggagtaggg aaagctgagc cggcggcgcg cggggaccgg tagcgaaggc agcgggctct
      361 aaagtatgca aagggactcc acgcgggccc agccactcac ggacatcgga catcgcagaa
      421 gtttggtggc tgctggctgg gtggcgtcga tgacctggag ccccaccgct cgcgggggct
      481 gagcagccgc cacttcccct ctggtccggc ttttgtgtct cgcgtcttct gctcatgctg
      541 tgttcggcta cttctcgcgg tggccgctgc tgagctgtcc gacacagccg aggaccgagg
      601 acacgacggc tcccgcagcc gcagcgcggg gcgcaggagg gactatggga aacgggatgt
      661 gctcccgaaa gcagaagcgg atcttccaga cgctgctgct actcacggtg gtcttcggct
      721 tcctctatgg cgcgatgctc tacttggaac tgcagacgca gctgcgcaaa gccgaggcag
      781 tggcgctcaa gtaccagcag caccaggact cactctctgc tcaattgcaa gttgtgtatg
      841 aacacagatc aagattagag aaatctttgc aaaaagaaag gcttgaacac aagaaagcaa
      901 aggaagattt ccttgtttat aagttagaag cacaagaaac actgaacaaa ggaaggcaag
      961 attctaatag cagatacagt gcattgaatg tccaacatca gatgctgaaa agtcagcatg
     1021 aggagctgag gaagcagcac agtgacctgg aagaggaaca tcgtaagcaa ggggaagatt
     1081 tcagcagagc attcaacgac cacaagcaga gatacctgca gcttcagcaa gaaaaggaac
     1141 aagaactttc caagctcaaa gaaactgtat ataatttgag agaggagaat agacaactac
     1201 gaaaagcaca ccaagacatt cacacacagc ttcaagatgt caagcaacag cataagaatt
     1261 tactctccga gcacgaacag cttgtagtga ctttggaaga ccacaagagg gcactggctg
     1321 ctgcgcagac tcaagttgca gaatataaac agctgaaaga tacactgaac aggattccaa
     1381 gctttcgaaa tcctgaccca gctgagcagc agaatgtcac atttacccat gggactcacc
     1441 ctcctcaagg ttacaacgta agagagaagc tgacaggaga gctacaagag gggcagcaga
     1501 accatgacgc gatgcctaga agaatggaag agaaaccttt gtcatccatg cagaaggaag
     1561 caggatttca ggctctagaa gagcagaacc aagtagaacc cagagagcct gaggggcgtc
     1621 aagtggaaga ggaacacagg aaggcactgg aagaggagga aatggagcag gtgggacagg
     1681 cagagcatct agaggaagaa cacgacccat caccagagga gcaggatcga gagtggcgcg
     1741 atcagcggag acagaatgca gcccaccttc tggatggccg ccctcaagct gagattgagc
     1801 attcaaccaa ggcagctaca aacttccggt ccccatatga ggagcagttg gaacagcaga
     1861 ggctggcagc aaggagagat gaggaagccc agcggctgag agaacatcaa gaagctttgc
     1921 accaacagag gctccacgga cagttgctac gacaacagca gcagcagcag tacctggcca
     1981 gagagatggc tcagcagaag caggcagacc atgaggaagg ccagcagcag taccagctaa
     2041 ggcagcaagc tcattctgat gctgtggaga atgatgttgc acagggagcc gaggaccaag
     2101 gaatccctga agaagaggga ggtgcctatg atagagataa ccaacgccaa gatgaagctg
     2161 aaggagaccc aggcaacaga caggaatttc atgaaccagg acaccaagaa ggcgacccag
     2221 aagctgaagc agatagggca gctgcgcagg atataaaccc agcagatgac cccaacaatc
     2281 aaggcgagga tgaattcgaa gaagccgagc aagtgagaga agaaaatttg ccagaggaaa
     2341 gtgaagagcg aaagcaaagc gaagcaaagc aagggaatgt ggaaatggac gagcatctgg
     2401 tgatggcagg gaatccagac cagcaggaag ataatgttga cgagcaatac caggaagaag
     2461 gagaggaaga ggttcaggaa gatttgactg aagagaaaaa aagggaattg gagcataatg
     2521 ctgaagagac ttatggtgaa aaccctgatg ataagaacaa tgatgttgaa gaacaaggag
     2581 ttcctaacag ggcccatccc aaaggaagac aggagcatta tgaagaggag gaagatgaag
     2641 aggacggggc cgctgtcgct gagaaatcac accgtagagc tgaaatgtaa ctggacccgg
     2701 tttctagact gtgctcagcc aacaagtttt ttttcaagct gctctaaaac aaatcccgcc
     2761 tactgaattc tagagtattt aattacatgc aaaagtaagg gtttagactt tttttaactt
     2821 ttttattaga aatgctatac atttatatga atatattttg ataccttagg tgagaacttc
     2881 ttttataatc aagttaaaca tggacaagaa gaaaaacagt aagacctggc ttcaggtctg
     2941 aatctcattt ctcagcgatg gtaggatgat gtgcttggct tttgtgcatg tctcagctca
     3001 gtactctttt attctctggc ttctgggttg gctactattt atctcagata aaatgcagga
     3061 tatagaaaaa aggtgtactg agaaacactg tgcaaatgcg aagggaatgg ctggtcgctt
     3121 agtggctgtt cttgcaggtt cttgtgtaca gctctggaag gatgttacta ctgcagggca
     3181 ttggcaaatg agattcatct gcacagtgga catgcaaatg gaaagcctgc gtgtgtgtgt
     3241 gtgtgtgtgt gtgtgtgtgt gtgtgtaaac aaagacatcg tttctcgagc tttcaggtca
     3301 cttacaagaa tacgtagcaa tgcttaaaat cacggcagtc ttgcttgaga ggaatcaagt
     3361 gtgaaagttg aataatatta ataccgctat gaaagtatca tggactcagt cctgctatag
     3421 aggccaaagg agctgacaca ctttaaaacc tatgtagtat gtgcgatgac gcttcctggg
     3481 ggaactccca gtctccgtca tttcttctcg aaagtctctc agttatctgc tcatcattat
     3541 ccactttcta cagcatatgt ttctttctta agctctgtgc cttggtatgt aaccatttga
     3601 ttcacaatta tggataggaa agcatgcaaa gctacagttt aatatgatta tttttaagag
     3661 tatatggtaa aatatctata gcactatgat aggcacccca cccttagtgg ctttactatt
     3721 tacccagaat tgacctgcct tggcctatga acaaggcatt ctaatggcta taaataataa
     3781 taatatccat cctttacaag aaaacgcaaa ctggaaactt ttccccgaaa tgagcacata
     3841 ttttagttta gatcgtcgat attgttaaac acatcgaaat gggccacagt taatctgtgt
     3901 gtggtacttt caaaataata aaagcaattt cattttctgt tattatcagg tgaatgtagt
     3961 tttagttttt aataaccaca cttatgtatg gttttgattt tcacagctga gcaattgtgt
     4021 ttgtatgcat agaaatgttc tgttcaaatt ttgtttggat ttccagtaac cataaatcat
     4081 atctcatctt tatgtataaa agccccatat gtaatgtaaa atgtattata ttgtacataa
     4141 tactcagaat acaattattt tggtaaatta gtttgtattt ttaatgtccc ttcgcagtat
     4201 ttaattattt gaaatatatt gaaatttggg taataatcaa taaagctata aaaagttaag
     4261 ggtaagtctt ttaaagcatc taatttttta gtggtttgtg atctatggtt tttctttaca
     4321 ggacaatata aagtaatgaa ttattaaatg cttccatcaa
//
