LOCUS       NM_001305219            1040 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus golgin A7 family, member B (Golga7b), mRNA.
ACCESSION   NM_001305219 XM_001055463 XM_219889
VERSION     NM_001305219.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Woodley,K.T. and Collins,M.O.
  TITLE     S-acylated Golga7b stabilises DHHC5 at the plasma membrane to
            regulate cell adhesion
  JOURNAL   EMBO Rep 20 (10), e47472 (2019)
   PUBMED   31402609
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Mar 4, 2015 this sequence version replaced
            XM_219889.8, XM_001055463.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.8876.1,
                                           SRR26360181.1627179.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000001.1  251008454-251008524
            72-169              JAXUCZ010000001.1  251010999-251011096
            170-453             JAXUCZ010000001.1  251016805-251017088
            454-579             JAXUCZ010000001.1  251023522-251023647
            580-732             JAXUCZ010000001.1  251026684-251026836
            733-834             JAXUCZ010000001.1  251026910-251027011
            835-1040            JAXUCZ010000001.1  251028155-251028360
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..1040
                     /gene="Golga7b"
                     /note="golgin A7 family, member B"
                     /db_xref="GeneID:309378"
                     /db_xref="RGD:1583839"
     exon            1..71
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     exon            72..169
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     exon            170..453
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     CDS             442..945
                     /gene="Golga7b"
                     /note="golgi autoantigen, golgin subfamily a, 7B"
                     /codon_start=1
                     /product="golgin subfamily A member 7B"
                     /protein_id="NP_001292148.1"
                     /db_xref="GeneID:309378"
                     /db_xref="RGD:1583839"
                     /translation="MATEVHNLQELRRSASLATKVFIQRDYSDGTVCQFQTKFPPELD
                     SRIERQLFEETVKTLNGFYAEAEKIGGSSYLEGCLACATAYFIFLCMETHYEKVLKKI
                     SRYIQEQNEKVFAPRGLLLTDPVERGMRVIEISIYEDRCSSGSSSSGSSSGSGSSSAG
                     GGGAGAR"
     exon            454..579
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     exon            580..732
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     exon            733..834
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
     exon            835..1040
                     /gene="Golga7b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaagccctg tctgtgagta gggtggctga agggggcttt ggattggcag tctttgacac
       61 gtggctataa gagagtcccg ctgagctggg aagaagtgct acagacatcc agtagggcgt
      121 ctacctaaat ctgcttgttt tcttctcaaa gactcggttt ggaagtcagg agccctggca
      181 gcaggcgatc gagcggtgag gagcctcggg cgcggcctcg cctccccggc ccggctcccg
      241 cgtcagcacc gtggacagcg cagaccccct ctcagggacc cctcggctcg caggaacact
      301 ctacgggttt cggcgatctc atcagtaccg cggacagcgc ccaggccccc gctggccttg
      361 accgctcttc aaatcagcac cgcggacagc ccccctggac cagcccagca gcagccaagg
      421 actggtcaga acgcccggaa gatggccact gaggtccaca accttcagga gctcaggcga
      481 agcgcttcac tggccaccaa ggtctttatc cagagagact acagtgacgg caccgtctgt
      541 cagttccaga ccaaattccc accagagctg gatagccgga ttgagcggca gctcttcgag
      601 gagactgtga agaccctcaa tggtttttat gcggaggccg agaagattgg gggcagctcc
      661 tacctggagg gctgcttggc ctgcgccacg gcctacttca tcttcctctg catggagacc
      721 cactatgaga aggttctcaa gaagatttcc cgttacatcc aggagcagaa tgagaaggtc
      781 tttgctcccc gagggctcct gctcacggat cccgtggaac gcggaatgag ggttatcgag
      841 atctccatct atgaggatcg gtgcagcagt ggtagctcca gcagcggcag cagcagcggc
      901 agcggcagca gcagcgctgg cgggggaggg gcgggggccc ggtgactggc cgagagtccc
      961 tgcagggagg tgtacggccg gagcgagggg ctggcagatc tgcggaggct gcgctaccag
     1021 agcacccgct tctgagtctt
//
