LOCUS       NM_001033065            2917 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus golgin A5 (Golga5), mRNA.
ACCESSION   NM_001033065 XM_006240461 XM_216765
VERSION     NM_001033065.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Liu,X., Wang,Z., Yang,Y., Li,Q., Zeng,R., Kang,J. and Wu,J.
  TITLE     Rab1A mediates proinsulin to insulin conversion in beta-cells by
            maintaining Golgi stability through interactions with golgin-84
  JOURNAL   Protein Cell 7 (9), 692-696 (2016)
   PUBMED   27502188
  REMARK    GeneRIF: Rab1A mediates proinsulin to insulin conversion in
            beta-cells by maintaining Golgi stability through interactions with
            golgin-84.
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2917)
  AUTHORS   Malsam,J., Satoh,A., Pelletier,L. and Warren,G.
  TITLE     Golgin tethers define subpopulations of COPI vesicles
  JOURNAL   Science 307 (5712), 1095-1098 (2005)
   PUBMED   15718469
  REMARK    GeneRIF: characterization of the golgin-84-CASP tether binding to
            coat protein complex I (COPI) vesicles
REFERENCE   4  (bases 1 to 2917)
  AUTHORS   Wu,C.C., MacCoss,M.J., Mardones,G., Finnigan,C., Mogelsvang,S.,
            Yates,J.R. 3rd and Howell,K.E.
  TITLE     Organellar proteomics reveals Golgi arginine dimethylation
  JOURNAL   Mol Biol Cell 15 (6), 2907-2919 (2004)
   PUBMED   15047867
REFERENCE   5  (bases 1 to 2917)
  AUTHORS   Satoh,A., Wang,Y., Malsam,J., Beard,M.B. and Warren,G.
  TITLE     Golgin-84 is a rab1 binding partner involved in Golgi structure
  JOURNAL   Traffic 4 (3), 153-161 (2003)
   PUBMED   12656988
  REMARK    GeneRIF: Golgin-84 (Golga5) involved in generating and maintaining
            the architecture of the Golgi apparatus.
REFERENCE   6  (bases 1 to 2917)
  AUTHORS   Diao,A., Rahman,D., Pappin,D.J., Lucocq,J. and Lowe,M.
  TITLE     The coiled-coil membrane protein golgin-84 is a novel rab effector
            required for Golgi ribbon formation
  JOURNAL   J Cell Biol 160 (2), 201-212 (2003)
   PUBMED   12538640
REFERENCE   7  (bases 1 to 2917)
  AUTHORS   Bascom,R.A., Srinivasan,S. and Nussbaum,R.L.
  TITLE     Identification and characterization of golgin-84, a novel Golgi
            integral membrane protein with a cytoplasmic coiled-coil domain
  JOURNAL   J Biol Chem 274 (5), 2953-2962 (1999)
   PUBMED   9915833
  REMARK    Erratum:[J Biol Chem 1999 Apr 30;274(18):12950]
REFERENCE   8  (bases 1 to 2917)
  AUTHORS   Klugbauer,S., Demidchik,E.P., Lengfelder,E. and Rabes,H.M.
  TITLE     Detection of a novel type of RET rearrangement (PTC5) in thyroid
            carcinomas after Chernobyl and analysis of the involved RET-fused
            gene RFG5
  JOURNAL   Cancer Res 58 (2), 198-203 (1998)
   PUBMED   9443391
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before Dec 5, 2020 this sequence version replaced
            XM_006240461.3, NM_001033065.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.16829.1,
                                           SRR26643296.18463.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-219               JAXUCZ010000006.1  127377244-127377462
            220-790             JAXUCZ010000006.1  127379894-127380464
            791-1015            JAXUCZ010000006.1  127382629-127382853
            1016-1235           JAXUCZ010000006.1  127383833-127384052
            1236-1359           JAXUCZ010000006.1  127384681-127384804
            1360-1563           JAXUCZ010000006.1  127386853-127387056
            1564-1734           JAXUCZ010000006.1  127391370-127391540
            1735-1863           JAXUCZ010000006.1  127393962-127394090
            1864-1962           JAXUCZ010000006.1  127396929-127397027
            1963-2188           JAXUCZ010000006.1  127399410-127399635
            2189-2294           JAXUCZ010000006.1  127401252-127401357
            2295-2358           JAXUCZ010000006.1  127403250-127403313
            2359-2917           JAXUCZ010000006.1  127404846-127405404
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..2917
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /note="golgin A5"
                     /db_xref="GeneID:299258"
                     /db_xref="RGD:1308163"
     exon            1..219
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            220..790
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     CDS             250..2439
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /note="golgin-84; golgi autoantigen, golgin subfamily a,
                     5"
                     /codon_start=1
                     /product="golgin subfamily A member 5"
                     /protein_id="NP_001028237.2"
                     /db_xref="GeneID:299258"
                     /db_xref="RGD:1308163"
                     /translation="MSWFADLAGRAEDLLNRVDQGAATALRKESTSNTFYSKNTDYPE
                     LHQQNTDSTYHTGQKANYISSAADNIRHQKATIIAGTANVKVGSRTGGDASHPTEHAS
                     VPRPSSHFVRRKKSEPDDELLFDFLNSSQKEPTGRVEIKKEKGKAPVLPSSQSSAVSS
                     VTTSVTTIKATEENSGSQSPEVSSSDSMPEGHKKSTEESTVSNATSVEHSSAPSDGSM
                     SHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARVRVEKWNVDNSKSDR
                     ITRELRAQVDDLTEAVAAKDSQLAVLKVRLQEADQVLSSRTEALEALQSEKSRIMQDH
                     NEGSSLQNQALQTLQERLHEADATLKREQESYKQMQSEFATRLNKMEVERQNLAEAVT
                     LAERKYSEERKKVDDLQQQVKLHRSSLESAKQELVDYKQKATRILQSKEKLINSLKEG
                     SSFEGLDSSTASSMELEELRHERELQKEEIQKLMGQIHQLRSELQDMEAQQVSEAESA
                     REQLQDLQDQIAKQRASKQELETELDRMKQEFHYVEEDLHRTKNTLQSRIKDREEEIQ
                     KLRNQLTNKTLSNSSQSELESRLHQLTETLIQKQTLLESLSTEKNSLVFQLERLEQQL
                     HSAATGPSSGSSINMSGVDSGEGTRLRNVPVLFNDTETNLAGMYGKVRKAASSIDQFS
                     IRLGIFLRRYPIARVFVIIYMALLHLWVMIVLLTYSPEMHHDQPYGK"
     exon            791..1015
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1235
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1359
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..1563
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..1734
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1735..1863
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1864..1962
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            1963..2188
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            2189..2294
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..2358
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
     exon            2359..2917
                     /gene="Golga5"
                     /gene_synonym="Ret-II"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaggcgct agggccccgc ggccgccggc gccgccgcct gagtgacctg ctaggcggcc
       61 agcggcactc agctatccgc cgctcaggca gctgagcggc cactctgttt tgaggtcctc
      121 gccgcccttc cacgtctccc ggaagagcta gccggcaggt ccgggagcag ccggctgctg
      181 tggcggcccg ggtgggtgac gaggccgcgg cgtcctcagg ttcatcagta gaattatttt
      241 gctaccatca tgtcttggtt cgccgatctt gctggaaggg ctgaagatct tttaaaccga
      301 gtggatcagg gggctgcaac agctctcaga aaggagagta ccagcaacac cttttatagc
      361 aaaaatactg actatcctga acttcaccag caaaacacag attcaactta ccacactgga
      421 cagaaagcta actatatttc ctcagctgct gataacatcc ggcatcagaa agccacgatc
      481 atagctggca cagcaaatgt gaaagtcgga tccaggacag gcggagatgc ctcccatccc
      541 actgaacatg catctgtccc taggccttca tcccattttg ttcggaggaa aaagtcagag
      601 cctgatgatg agctgctatt cgattttctt aacagttccc agaaagagcc cactgggaga
      661 gtggaaatca agaaagagaa gggcaaagca cctgtgctcc caagttctca gtcatcagct
      721 gtcagttctg tcaccaccag tgtaaccacc atcaaggcca ctgaagaaaa ttctgggagc
      781 caaagtcctg aagtgagtag ctctgattct atgccggaag gtcataaaaa atccacagag
      841 gaaagcacag tatcgaatgc taccagtgtg gagcacagct ctgcacctag tgatggaagc
      901 atgtcccatg agctgtctaa tctccgactg gagaatcagc tgctcaggaa tgaagtccag
      961 tctttaaatc aggaaatggc ctcattgctt cagagatcca aagaaactca agaagaatta
     1021 aacaaggcaa gagtaagagt tgaaaaatgg aatgttgaca attcaaagag tgatcgaata
     1081 actcgggaac tacgagccca agtcgatgat ctcactgaag cagtggctgc aaaggactcc
     1141 cagctggctg tcctcaaagt gcgactgcag gaggctgacc aggtgctgag ctcccgcaca
     1201 gaagcactgg aagctttaca gagtgaaaag tcacgaataa tgcaggatca caatgaaggt
     1261 agtagtctac aaaatcaagc tctgcaaact cttcaggaga ggctgcatga agcggatgcc
     1321 actctgaaga gagagcaaga gagctacaaa caaatgcaga gtgagtttgc tacacgcctt
     1381 aataaaatgg aagtggaacg tcagaatttg gcagaagcag ttaccctggc agaaagaaag
     1441 tactctgagg agaggaagaa ggttgatgac ctccagcagc aagtcaagtt acacaggtcg
     1501 agcttggagt ctgctaagca ggagttagtt gactacaagc aaaaagctac aaggatactc
     1561 caatctaaag aaaaactgat caatagctta aaggaaggct cgagttttga aggcctagat
     1621 agcagtactg ctagcagcat ggaactagaa gaacttcggc atgagagaga gttgcagaag
     1681 gaggagatcc agaagttgat gggccagata catcagctga gatctgagct acaggatatg
     1741 gaggctcagc aggttagtga agcagaatca gcaagagaac aattacaaga tctgcaagac
     1801 cagatagcta agcagagggc atctaaacaa gagctggaaa cggagctgga ccgaatgaaa
     1861 caggaattcc attacgtgga ggaagatctg catagaacga agaacacact gcaaagcagg
     1921 attaaagatc gagaggagga aattcaaaag ctgaggaatc agctcaccaa caaaacttta
     1981 agcaacagca gccagtcgga gctagagagc cgcctccatc agctaacgga aacactcatc
     2041 cagaagcaga ccctgctgga gagcctcagc acagagaaga actccctggt cttccagctg
     2101 gagcgcctcg agcagcagct gcactctgcc gccacggggc ccagcagcgg atcctccatt
     2161 aacatgtctg gagttgacag tggtgaaggg acacgcctgc gaaatgttcc tgttcttttt
     2221 aatgacacag aaactaatct agcaggaatg tatgggaagg ttcgcaaagc tgctagctcc
     2281 attgaccaat ttagtattcg cctgggaatt ttcctccgga ggtaccccat agcacgagtg
     2341 tttgtgatta tctatatggc tttacttcac ctctgggtca tgattgtcct gctgacctac
     2401 tcaccagaaa tgcaccatga ccaaccatat ggcaagtgag ctgagccgct ggctcccatg
     2461 agtgcctgcc attgtccaga gctggggtct gcaggaagag caacactaag acttctagga
     2521 acagtgcaca agatggtcgc atcatggaaa gcttctaatc ttctgactta tctctggtgt
     2581 ctgactttcc ccttttcctt aagagtctct aaatgcagac agtaatttga caaattaagc
     2641 tcgactgtct ctgagttcag ttgccctgga tatgtataga gaaagagaga tgggggctgc
     2701 tcacctctgt acagaccttt ctatatttta ggggacactg attatgggtt ataatcaggg
     2761 aaactaattg tatttaggga ttaaaaataa aaagattttt taataactta aagtgtttta
     2821 tattttcata tatttaactg caaatattta attttacatg ttagattctt ggtataattc
     2881 tctttttaaa tacataaata aaattcattg tgcattt
//
