LOCUS       NM_001395022            7046 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus golgin A1 (Golga1), mRNA.
ACCESSION   NM_001395022 XM_006234096
VERSION     NM_001395022.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7046)
  AUTHORS   Banushi B, Forneris F, Straatman-Iwanowska A, Strange A, Lyne AM,
            Rogerson C, Burden JJ, Heywood WE, Hanley J, Doykov I, Straatman
            KR, Smith H, Bem D, Kriston-Vizi J, Ariceta G, Risteli M, Wang C,
            Ardill RE, Zaniew M, Latka-Grot J, Waddington SN, Howe SJ, Ferraro
            F, Gjinovci A, Lawrence S, Marsh M, Girolami M, Bozec L, Mills K
            and Gissen P.
  TITLE     Regulation of post-Golgi LH3 trafficking is essential for collagen
            homeostasis
  JOURNAL   Nat Commun 7, 12111 (2016)
   PUBMED   27435297
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7046)
  AUTHORS   Liegel RP, Handley MT, Ronchetti A, Brown S, Langemeyer L, Linford
            A, Chang B, Morris-Rosendahl DJ, Carpanini S, Posmyk R, Harthill V,
            Sheridan E, Abdel-Salam GM, Terhal PA, Faravelli F, Accorsi P,
            Giordano L, Pinelli L, Hartmann B, Ebert AD, Barr FA, Aligianis IA
            and Sidjanin DJ.
  TITLE     Loss-of-function mutations in TBC1D20 cause cataracts and male
            infertility in blind sterile mice and Warburg micro syndrome in
            humans
  JOURNAL   Am J Hum Genet 93 (6), 1001-1014 (2013)
   PUBMED   24239381
REFERENCE   3  (bases 1 to 7046)
  AUTHORS   Pooley RD, Moynihan KL, Soukoulis V, Reddy S, Francis R, Lo C, Ma
            LJ and Bader DM.
  TITLE     Murine CENPF interacts with syntaxin 4 in the regulation of
            vesicular transport
  JOURNAL   J Cell Sci 121 (Pt 20), 3413-3421 (2008)
   PUBMED   18827011
REFERENCE   4  (bases 1 to 7046)
  AUTHORS   Feng L, Xie X, Ding Q, Luo X, He J, Fan F, Liu W, Wang Z and Chen
            Y.
  TITLE     Spatial regulation of Raf kinase signaling by RKTG
  JOURNAL   Proc Natl Acad Sci U S A 104 (36), 14348-14353 (2007)
   PUBMED   17724343
REFERENCE   5  (bases 1 to 7046)
  AUTHORS   Derby MC, Lieu ZZ, Brown D, Stow JL, Goud B and Gleeson PA.
  TITLE     The trans-Golgi network golgin, GCC185, is required for
            endosome-to-Golgi transport and maintenance of Golgi structure
  JOURNAL   Traffic 8 (6), 758-773 (2007)
   PUBMED   17488291
REFERENCE   6  (bases 1 to 7046)
  AUTHORS   Nichols RJ and Traktman P.
  TITLE     Characterization of three paralogous members of the Mammalian
            vaccinia related kinase family
  JOURNAL   J Biol Chem 279 (9), 7934-7946 (2004)
   PUBMED   14645249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000115.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001395022.2.
            
            On May 26, 2021 this sequence version replaced XM_006234096.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               JACYVU010000115.1  16269265-16269440   c
            177-225             JACYVU010000115.1  16268587-16268635   c
            226-508             JACYVU010000115.1  16267419-16267701   c
            509-599             JACYVU010000115.1  16261358-16261448   c
            600-674             JACYVU010000115.1  16258153-16258227   c
            675-772             JACYVU010000115.1  16257219-16257316   c
            773-805             JACYVU010000115.1  16255583-16255615   c
            806-934             JACYVU010000115.1  16253953-16254081   c
            935-1104            JACYVU010000115.1  16253339-16253508   c
            1105-1216           JACYVU010000115.1  16252758-16252869   c
            1217-1342           JACYVU010000115.1  16246735-16246860   c
            1343-1438           JACYVU010000115.1  16244575-16244670   c
            1439-1534           JACYVU010000115.1  16242862-16242957   c
            1535-1684           JACYVU010000115.1  16241557-16241706   c
            1685-1780           JACYVU010000115.1  16240992-16241087   c
            1781-1870           JACYVU010000115.1  16232913-16233002   c
            1871-1973           JACYVU010000115.1  16232074-16232176   c
            1974-2107           JACYVU010000115.1  16231842-16231975   c
            2108-2251           JACYVU010000115.1  16231416-16231559   c
            2252-2311           JACYVU010000115.1  16228713-16228772   c
            2312-2482           JACYVU010000115.1  16227976-16228146   c
            2483-2569           JACYVU010000115.1  16227493-16227579   c
            2570-7046           JACYVU010000115.1  16222517-16226993   c
FEATURES             Location/Qualifiers
     source          1..7046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..7046
                     /gene="Golga1"
                     /note="golgin A1"
                     /db_xref="GeneID:311919"
                     /db_xref="RGD:1311305"
     exon            1..176
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            177..225
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            226..508
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     CDS             374..2650
                     /gene="Golga1"
                     /note="golgi autoantigen, golgin subfamily a, 1"
                     /codon_start=1
                     /product="golgin subfamily A member 1"
                     /protein_id="NP_001381951.1"
                     /db_xref="GeneID:311919"
                     /db_xref="RGD:1311305"
                     /translation="MFAKLKKKIAEETAVAQRPGCTPRIPRSVSKESVASMGADSGDD
                     FASDGSSSREDLSSQLLRRNEQIRKLEARLSDYAEQVRNLQKIKEKLEIALEKHQDSS
                     MRKFQEQNETFQANRAKMAEGLALALARKDQEWSEKMEQLEKEKRFLTSQLQEVKNQS
                     LSLFQKRDEIDELEGFQQQEISKVKHMLLKKEECLGKMEHELDARTRDLNRTQEELVT
                     SNQLSSDLSQRLQELQRHCATLEEQRDHLTASKAGAEHKIVVLEQKEQELQAIIQQFS
                     IDLQKVNAETQEKEKVITHLQDKVTFLEKRLEQDLSGEDHVQELLKEKTVAEQKLQDT
                     RQQLLAAKNSHTKAVDLLETRVKDLEQSLQAAEEQLSQSRDVVAGQEAQIQKLITTNQ
                     ENNLSQQQVLALEQHCRERIHALEAQIEALEQTRAADQIASEQGMRQLQQENVALKES
                     RDECIQSLQHHQLELKKLKDEWNQREIVSVAMAQALEEVRKQREEFQQQATELTAIIE
                     EKNQSLCEKDEALLQKEEELQQLEKGHNSALLQMHQLQRELETLKTFRAQEAMPATTG
                     EDCLPLQGQEPLVISKAMQNCEYELPAAEGTPNGEVGAMDLKQLQKEKQDLEQQLTEK
                     NKIMKQMQQRMLELKKTLQKELKIKPDNELFEVREKTGPEIPNMAPSVTNNTDLTEAR
                     EINFEYLKHVVLKFMSCRESEAFHLIKAVSVLLNFSQEEENMLKETLEYKMSWFGSKP
                     APKGSIRPSISNPRIPWS"
     exon            509..599
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            600..674
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            675..772
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            773..805
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            806..934
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1104
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1216
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1217..1342
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..1438
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1534
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1684
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1685..1780
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1781..1870
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1871..1973
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            1974..2107
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            2108..2251
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            2252..2311
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            2312..2482
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            2483..2569
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
     exon            2570..7046
                     /gene="Golga1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcggcaaa cgtgcggttc cgggtcggta ttcggctcgt cggcctgagg tgggggccga
       61 gagccctcga gagtccgcgg aggcgtggct gctcttagac agcaagtgct ctactggagt
      121 ccctggacgc aagtaggcct ccctttctcc cgtggcctcc ggcggtctac cgcaagggca
      181 gtgactttga cctccagact gtcttaaaca tagtagataa gacagatcct gtgttgccaa
      241 aattctttgg cccacattta agtgggatgc agctagcctg gaggtgtgga accttttagg
      301 tacctgtgta tgaattccat tcactgagaa gtccaggggt tagtttcccc tgaaagatat
      361 ccacacagca aacatgtttg caaaactaaa gaagaaaatt gcagaggaga ctgctgttgc
      421 tcagaggcca ggctgcactc ctaggatccc tcggtctgtg agcaaggagt ctgtggcttc
      481 catgggggct gactcaggag atgattttgc ttccgatgga agcagctcca gagaagatct
      541 gtcatcccag cttttgagaa gaaatgaaca gatacggaag ttagaggcca gactctctga
      601 ctatgctgaa caggtccgaa acttgcagaa gataaaagag aagcttgaaa ttgcattaga
      661 aaaacaccag gattcttcca tgcggaaatt tcaagaacag aatgaaacat tccaagccaa
      721 cagagccaaa atggcagaag gactggcttt ggcattagcc aggaaggacc aggaatggtc
      781 agaaaagatg gaacagcttg aaaaggaaaa aaggtttcta acatctcagc tacaagaagt
      841 aaagaaccag agcttgagcc tttttcaaaa gagagatgaa attgatgagt tagagggttt
      901 ccagcaacag gaaatcagca aagtgaagca catgctttta aaaaaagaag aatgtttagg
      961 gaagatggag cacgagttgg atgcacgaac cagggacctt aatcgtactc aggaggagtt
     1021 ggtgacttct aatcagttgt catctgactt aagccagcga ctacaagaat tgcagagaca
     1081 ttgcgcaacg ctggaagaac agagagacca cttgacagct tcaaaagcag gtgcagaaca
     1141 taagattgta gtcctggaac aaaaggaaca agagctccag gcgatcatcc agcagttttc
     1201 cattgaccta caaaaggtca atgctgaaac tcaagaaaaa gaaaaagtca tcacacattt
     1261 acaagacaag gttacattct tggaaaagag actagaacag gacttatcag gagaagatca
     1321 tgtacaagaa ctcttgaaag agaaaactgt ggctgaacag aaactgcagg atactaggca
     1381 acagctcttg gctgccaaga acagccacac caaggcagtt gacctcctgg agactcgggt
     1441 gaaggaccta gagcagagcc tacaggctgc tgaagagcag ctaagccaga gtagagatgt
     1501 tgtggctggc caggaagcgc agatccagaa gcttatcact acaaaccaag agaacaacct
     1561 ttcccaacag caggttcttg ccctggagca acattgcagg gagcgcatcc atgcactgga
     1621 ggcccaaatt gaagctctgg aacaaacacg ggcggctgac cagatagcct ctgagcaggg
     1681 aatgcggcaa ctgcagcagg aaaatgtggc ccttaaagaa agcagagatg agtgtataca
     1741 gtccttacaa catcaccaat tggaactaaa gaaactcaag gatgaatgga accaaagaga
     1801 aattgtgagt gtggcaatgg ctcaagccct ggaggaggtg cggaaacaga gagaagagtt
     1861 ccagcagcag gccactgagc tgacagccat catagaagag aaaaatcaga gcctatgtga
     1921 aaaggatgag gcacttctcc agaaggagga ggaacttcaa cagctggaaa aaggtcacaa
     1981 ctctgccctg ctgcagatgc accaactgca gagagaacta gagaccttga agactttcag
     2041 agcccaggag gcaatgccag ccacaacagg agaggactgc ctgccactgc agggccagga
     2101 gccactagtc atctcaaaag ccatgcagaa ttgtgagtat gagcttccag ctgcagaagg
     2161 aactccaaat ggtgaggttg gagccatgga tctaaagcag ctacagaaag aaaaacagga
     2221 cttagaacag caacttacag agaaaaataa gattatgaag caaatgcagc agaggatgct
     2281 ggaacttaag aagactctgc agaaagagct gaaaatcaaa cctgacaatg agctttttga
     2341 ggtccgggag aagacaggcc ctgagatacc aaatatggcc ccttctgtca ctaataatac
     2401 tgacctaact gaagcccgag agatcaactt tgaatacctt aaacatgttg ttttaaaatt
     2461 catgtcctgt cgagaatctg aggcttttca tctcataaaa gcagtgtcag tgctgctgaa
     2521 tttctcacaa gaagaggaga atatgctcaa agagactctg gaatataaga tgtcttggtt
     2581 tggatccaaa ccagctccca agggcagcat ccggccatct atctccaacc ctcggatacc
     2641 atggtcctag acccacccaa ggatagagct acgtgggctg acactcttcc tatgaaaaga
     2701 atactgacac agcagactgg gtgggttttt aaatcaatgt aactctagta ttgtgtacaa
     2761 gtgtctagac agtttacaac cgtgcacact gatgatgaac ttcagaggga gccaatttta
     2821 tcataatggt cattaacacg agaaggaatc cagggcactg cccagatttc cacagtgctg
     2881 ctaatatccc agctgtggcc agctgtaact gggtcctcta tcttaatatt agcacttaaa
     2941 attgaagtga ttggcatgtc aggtgaaaac taattatcaa gcagaggtaa catgactgaa
     3001 agtggagaga gtcctttcat aaaaagctaa ctcaagggtg gtctttggag tccccttcta
     3061 ctagcaagtc tgggttttca tgcactgttg cctctcaaga aagtatcatt acactttgtt
     3121 tccccaacca cctagaactt gagatgtgtc catctcatag gttacggggc cagtgtggac
     3181 tgatgagtat gcaactttcc agtcctgaga aaactagcaa gcagacggaa tgatctctac
     3241 gtatagcacc aaatacactc aattgccttc ttaatgaatg tactcgtctt ggatgggttg
     3301 ctggtaaacc attttaaaac tatttttata gcaaaagttc ttcgctatta taaacatgtc
     3361 ttctgtatta taaaatccat ttaaaaagga aaatcagagc ttcaagtctt tctagtgcca
     3421 ggacacattc ccctttgtag tttttcttgc cttctgtggt acctgctctc tgaagcagta
     3481 gtttctcctg ctttgctcta aattctcata ttaccactga gccaatcata cttaagaaca
     3541 acctgctgaa ttcaacagaa gcaggctgtc cctctctacc ctcattattt ctaatgacac
     3601 tacattgata cgtagcaccc aggcagccca gctggctgcc acacttgaca acacacagat
     3661 agaaacttat gttcattttt acacttgttc tgggtaagcc acatcagatc ttaagggaag
     3721 ccatttgagt ttaatgaaag ttacattagc aagtaaacta gtaattggag cttgtaaagt
     3781 taccatgtat ctaggtgaat ttgttcttca gcttcaagtc aacatatgta cgtacatgcg
     3841 tatgtgttat acaaaaaccc aagtatttgc agcatttgcc ttctaaatct aaatcgggat
     3901 ggcattgctt tggctgtggc tcttcttttt tttttttttt tttttttttt ttttttttgg
     3961 ttcttttttt cggagctggg gaccgaaccc agggccttgc gcttcctagg taagcgctct
     4021 accactgagc taaatcccca gccccggctg tggctcttct tacagaagtt tccctttagg
     4081 gtgccacttc ccatttagtg ggacatgaaa ccagagcccc actgttgatt ttacagagga
     4141 agaagtagct tctccaagta ggattacttc ccttcctcct gtcccaggta agaaatccca
     4201 gaggactgag cagtccaggc agctgcagtt ccagctgtgg aagccctttc tacacctgag
     4261 gtttctcagg cccatgatct gatgtgtctg tctgtctctg tctctgtctc tgtctctgtc
     4321 acacacacac acacacacac acacacacac acacacacac acacacacac acacctctgc
     4381 ctgcctgcag gttgcggtgt gactgtgggg cccacttatt tagaatggct ttcctgctgc
     4441 atgttgagct cctccagtac tagaagagtg cagtagccat tcaagtggct tcatgcactt
     4501 ctataaactt cggtaagaga cagtgtgtag ccctttatat atgagcactg gactgtgatc
     4561 ttactaccaa tgtaaatagg aacagtacta tctaaaaact gctgtagcag agttatttgt
     4621 ggtgcaatac tttttgatta aagctcttca agatgcaact acagtgagtt ttacttgata
     4681 aaagtttgag atgtgtttat tttgacctgt caaatcttgt ctttgggttt gtttgttttg
     4741 gttttttttt tttttttttt tttttttttt tttttttttg aaacaggctt tctctgcata
     4801 gccctggctt tcctagaact cattctgtag accaggctgg cctcaaactc agatccacct
     4861 gcctcccaag tgctgagatt cagctttgta ctgactatca tatttcaacg actacagatg
     4921 tttctttcaa aaggaagcaa gctcctcaga ttaaaggtga ataaatatga tttaatggcc
     4981 ccgtgggcta gttttacctc tcaagcatga gtggttctac agaggatcta ggacgggcag
     5041 ggccggtgca cttgagccag catttaagct gcagttgtga tgctcaggag cacttgcttt
     5101 agggctcata gctgactgcc attattgggg tttagaacag accctacatc aggagacagt
     5161 gaccagaact tgcccaggct acatctgtaa tcacacaaac ggatgacttt tgaagcctca
     5221 atcattaaag gtttggcact ttattaaata agctccaaaa ttacatacaa atcaaaagag
     5281 taagaaaaat aaacactcag caaaatgtct ctcggtagca tccagcacca ctgcagttaa
     5341 agtatggcat agctgtggta tcaccatgct cgctttcccc gtccccaagg atggcaggac
     5401 agggacatca gctttccaaa ccaaactgtc atcattcatt gctatccctt tctttaccat
     5461 ttaacataca gagaacacac ttcaatgaat agactaataa gccaagagct ttattgatgc
     5521 agcaggcact ttacaatgaa cccaagagag cctgccttct ctgagaagac aggatgtctg
     5581 tacaaactct catcaggttt tttccacttc agaacccaag ctctcctttt caccacagcc
     5641 cttgggtctg cacctgccca aatagtccct ccccattcca aacagacagt gctcacaggt
     5701 acacctcaca taatctggcc agtcagccag atagtcaagt gttggttctg tgttactctg
     5761 tagacaaagg cagacactct ggtcctgcaa agaatttagg aatcaataag acaatttctc
     5821 cctccacctc aaaagtaaaa tacattccag cagatgtgtc ctgaagtatt tagttgggag
     5881 ttctaggaag atggtccatt gtcagtccct tcttcactag cctgggcatc caaaattctt
     5941 ctcaaggtaa caggattctt tttttttttt taaacagtct ttcttgctgt aagaactctt
     6001 ataatggagc ctagtcctcc aacagctaaa gcctgtggag acaggaaaag gaaacacgtc
     6061 aaatggtacc tgactggcca gaagggagct tcactcacct ggagatgagg acacatattc
     6121 ccagacctca atcccaccat gtcacaggct tgctgagaga gatcaagttc tagggagagc
     6181 cctgtcttag agccaagggt cccaaaagct tacagctctt gaagcaataa aactggcttg
     6241 ggatcactgt ccccaagcat ccaacaaagc ctgagtttcc ctgtaacatg ctctgcttct
     6301 acctgccagc acctgcctat ccctggaaac acatggcagc ccatagagaa ctacctactg
     6361 acagggtgac atcaaaagca cctcacaggg ttgaaaaggc ctaaccgtct caccaccaac
     6421 agcaattcct gaacccaagc aaagatgaag cttaaaaagt cagcacccca acagggccag
     6481 aagccacagc ccaacacttt gctggaaact gacctaccag taaaaacagc attcttaaaa
     6541 actcagcgct gccaagggat atagttcaat acaagatcac ttgcctaaca cataccagaa
     6601 ccccagttct gtctctacca caggaaaaat atctcaggct ggagatgtac ttcggttggt
     6661 ggaatatcct ctcagcaagc attaagacca ggattccatc cccagcacca tgtaaaattc
     6721 agtatggtat tatatgcctg caatctctat ctacattaag attaaaagtt taaagtcatc
     6781 cccaatttaa aaacaaattt gtggccaacc tgagctacat gagactttat ctcatgctga
     6841 accactgaca agaactgtgt tcatcagtct ggaacccata agtgctgggt gtatttactg
     6901 aagtgttaca gggctgcagg tggtgtgcag ctgacagaca ggacaaaagt ttgacacatg
     6961 ccttggtcct ctatccttca agtaaaggac aaaaaaaatt tttttgcttc cagtgaatga
     7021 aagctataat aaatgactcc aatttc
//
