LOCUS       NM_001134995            2199 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus glucosamine-6-phosphate deaminase 1 (Gnpda1),
            mRNA.
ACCESSION   NM_001134995 XM_001066558
VERSION     NM_001134995.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2199)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   2  (bases 1 to 2199)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 2199)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   4  (bases 1 to 2199)
  AUTHORS   Montag,M., van der Ven,K., Dorbecker,C. and van der Ven,H.
  TITLE     Characterization of testicular mouse glucosamine 6-phosphate
            deaminase (GNPDA)
  JOURNAL   FEBS Lett 458 (2), 141-144 (1999)
   PUBMED   10481053
REFERENCE   5  (bases 1 to 2199)
  AUTHORS   Wolosker,H., Kline,D., Bian,Y., Blackshaw,S., Cameron,A.M.,
            Fralich,T.J., Schnaar,R.L. and Snyder,S.H.
  TITLE     Molecularly cloned mammalian glucosamine-6-phosphate deaminase
            localizes to transporting epithelium and lacks oscillin activity
  JOURNAL   FASEB J 12 (1), 91-99 (1998)
   PUBMED   9438414
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473974.1.
            
            On Sep 17, 2008 this sequence version replaced XM_001066558.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2199
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..2199
                     /gene="Gnpda1"
                     /note="glucosamine-6-phosphate deaminase 1"
                     /db_xref="GeneID:683570"
                     /db_xref="RGD:1585624"
     exon            1..43
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     exon            44..173
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..919
                     /gene="Gnpda1"
                     /EC_number="3.5.99.6"
                     /note="oscillin"
                     /codon_start=1
                     /product="glucosamine-6-phosphate isomerase 1"
                     /protein_id="NP_001128467.1"
                     /db_xref="GeneID:683570"
                     /db_xref="RGD:1585624"
                     /translation="MKLIILEHYSQASEWAAKYIRNRIIQFNPGPDKYFTLGLPTGST
                     PLGCYQKLIEYYKNGDLSFKYVKTFNMDEYVGLPREHPESYHSFMWNNFFKHIDIHPE
                     NTHILDGNAADLQAECDSFEEKIQAAGGIELFVGGIGPDGHIAFNEPGSSLVSRTRVK
                     TLAMDTILANARFFDGDLAKVPTMALTVGVGTVMDAKEVMILITGAHKAFALYKAIEE
                     GVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLMLVHNKLVDPLYSIKEKE
                     IQKSQSAKKPYSD"
     exon            174..275
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     exon            276..458
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     exon            459..643
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     exon            644..818
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
     exon            819..2199
                     /gene="Gnpda1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgccagt gctgtcgccg ctgcagctgc ggaaagccta cgagtcgaga tgaagctcat
       61 tattctggaa cactattcac aggccagtga gtgggcggcc aagtatatta ggaaccgcat
      121 catccagttt aacccaggac ctgacaagta cttcaccctg gggctcccca ccgggagcac
      181 cccgcttggc tgctaccaga agctgattga gtactataag aatggggacc tgtcctttaa
      241 atatgtgaaa accttcaaca tggacgagta tgtgggtctt cctcgagagc acccagagag
      301 ctaccactcc ttcatgtgga ataacttctt caagcacatt gacatccacc ctgaaaacac
      361 ccacattttg gatggaaacg cggctgacct gcaggctgag tgcgactcct ttgaggagaa
      421 gatccaggct gcaggaggga tcgagctctt tgttggaggc attggccccg atggacacat
      481 tgccttcaat gagccaggct ccagtctggt gtccaggacc cgtgtgaaga ctctggccat
      541 ggacaccatc ctggccaacg ctagattctt tgatggtgat cttgccaagg tgcccaccat
      601 ggccctgaca gtgggtgtgg gcactgtcat ggatgctaaa gaggtgatga tcctcatcac
      661 aggtgctcac aaggctttcg ctctgtacaa agccattgaa gagggtgtga accacatgtg
      721 gacggtgtct gcctttcagc agcatcctcg cactgtgttt gtgtgtgacg aggatgccac
      781 cttggaacta aaagtgaaga ccgtcaagta tttcaaaggt ttaatgcttg ttcataacaa
      841 gttggtggac cccctgtaca gtatcaagga gaaggaaatt cagaaaagcc aatctgctaa
      901 gaagccatac agtgactagc ctctgctggg acatggtgct cgggacctca gagggacagg
      961 caggcctttc ctcaagtgtc tgtaggagac gagaatcacc tttcagtcca ctatggctgc
     1021 tgcagatcct tgctcagcac atacaggtta gggagtttag ctgtggagaa cacggtttat
     1081 aacttttccc tcttttcagt actggaggct ggacctgggg cccatgcaca tgtcaaggag
     1141 gtgctttgct aactgagctc tgtccccaac tccataatgt tttgtaacag agctctccat
     1201 cactggctgt cattctaccc aggggaggac tctcgctgcc cttctgcccg tacgacatgc
     1261 ccagcacact cctgtcaagc actctgtata cgcactcttt cttgagtggg cagggattag
     1321 ggcttgtgca ctctggacgc agcctttttg gattcttgag agcccctctt ctggcagcct
     1381 tcccattgag aatttttgtt ttaaagaata tacttcttga gcctgaatta tgcataagga
     1441 agcagcccat cctgccagaa ccaggtacct gggggagaag cctgtcccat ccccattgtg
     1501 tggatgttgt caacagctag cctttctgta aacaggcttt gggtaggact gggcatgtgg
     1561 ggctaggatg actctcacag ataaactctt ccaaaggcca gtcatgtctc gttctctctt
     1621 aagattccaa gagaaaggtg aaaagccctc ctgtctgagc tgttttcctc catagagtct
     1681 tacacactcc ctagtaagga gatccacttg ggtcacaaac acagccgtga tttcagtgtt
     1741 tctcacccaa ggtggggaac cgcatttaca catccaagct gtgttctctt tcctcctcag
     1801 agctgagcgc cgagattata caagctagtg ctgtctcctt gcttaaagcg ctctgtgatt
     1861 cccacctttc agggtgacaa ggtatcatca tcagatcatc agaactacaa cccttcaccc
     1921 acctgtcgtt caagctccct tcccaggctc ccctgtcttt atattctctg cctctgtgga
     1981 ctggttgctg cctccttttc tgtcctgtgc ctgtctgaag ctagagctgc ctatttccag
     2041 gagaggtctt tcagattctg gccaggccct ccagaagtac tgtgtttggt accagcactt
     2101 gtttgtagtt tttatatgtg attgtactgt tctgtgttaa gctaatggat caatggactt
     2161 gtttacaatg tgatattttc tattaaattg aatattttc
//
