LOCUS       XM_039095495            1591 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GDP-mannose 4, 6-dehydratase (Gmds),
            transcript variant X2, mRNA.
ACCESSION   XM_039095495
VERSION     XM_039095495.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095495.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1591
                     /gene="Gmds"
                     /note="GDP-mannose 4, 6-dehydratase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 13 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:291095"
                     /db_xref="RGD:1311008"
     CDS             374..1255
                     /gene="Gmds"
                     /codon_start=1
                     /product="GDP-mannose 4,6 dehydratase isoform X2"
                     /protein_id="XP_038951423.1"
                     /db_xref="GeneID:291095"
                     /db_xref="RGD:1311008"
                     /translation="MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEY
                     TADVDGVGTLRLLDAIKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGA
                     AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFS
                     LGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFMHIGKTIV
                     WEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVAFDELV
                     REMVQADVELMRTNPNA"
ORIGIN      
        1 atcacttgct aactgtgatg agatctagaa ttactccggc agtagacttt gggggtgttt
       61 ctctggggga ttatcttgat aagattaatc aaggtcagaa gactcatcca cagtgggtgg
      121 caccaaatct ggggctggga ttctggatta tgtgaataag aaagagagct gagcacacaa
      181 gcactgcttt ctacttctcg actgtggatg tgacaggctg cttctagttc cggctgctga
      241 tggttcatac ttggcagaat tcctgctgga gaaaggatac gaggtccatg gaatagtacg
      301 gcgatctagt tcatttaata caggtcgaat tgaacattta tataagaatc ctcaggctca
      361 tattgaagga aacatgaagt tgcactatgg cgacctgact gacagcacct gcctggtgaa
      421 aatcatcaat gaagtgaagc ctacagagat ctacaatctt ggcgctcaga gccatgtcaa
      481 gatctccttt gacttagctg aatacaccgc agacgttgat ggagttggca ccttgcggct
      541 tctggatgca attaaaactt gcggccttat aaattctgtg aagttctacc aggcctcgac
      601 aagtgaactt tatggaaaag ttcaggaaat accccagaaa gagaccacac ctttctatcc
      661 gaggtcaccc tatggagccg ccaagctcta tgcctattgg attgtggtga atttccgtga
      721 agcttataat ctctttgcag tgaatggcat tctcttcaat cacgagagcc ccagaagagg
      781 agctaatttt gttactcgaa aaattagccg gtcagtagct aagatttacc ttggacaact
      841 ggaatgtttc agtttgggaa atctggatgc caaacgagac tggggccatg ccaaggacta
      901 tgtagaggct atgtggctga tgttgcaaaa tgatgagccg gaggactttg tcatagctac
      961 tggggaagtt cacagtgtcc gtgaatttgt tgaaaaatca ttcatgcaca ttggaaaaac
     1021 cattgtgtgg gaaggaaaga atgaaaatga agtaggcaga tgtaaggaga ccggcaaaat
     1081 tcacgtgact gtggatctga aatactaccg accgactgaa gtggactttc tacagggaga
     1141 ctgctccaag gctcagcaga aactgaactg gaaaccccgc gttgccttcg atgagctggt
     1201 gagagagatg gtgcaggccg acgtggagct catgaggacc aaccccaacg cttgagcccc
     1261 tctgcagaaa ctagaggcat ggcaacagtg cagagccagt gaaccggagt tcagtcactc
     1321 ctgccaatca tggaccctcg acctcctgtg ttgtccctgc atctagagct gggccacaga
     1381 ggtttgtaga ccccaagaca ggacacgcca gacctaaggc cgcattgctt ttgtcaaagc
     1441 ctcctctgaa tggttttggg aaatcaagaa gttttaatca catattcatt ttacttgaaa
     1501 ttatgtcact agacaactta tattttggag tcttgagatt gtttttctct tttcttatta
     1561 aataatcttt ctataaacta gcaataacag a
//
