LOCUS       XM_039095494            1474 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GDP-mannose 4, 6-dehydratase (Gmds),
            transcript variant X1, mRNA.
ACCESSION   XM_039095494
VERSION     XM_039095494.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095494.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1474
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1474
                     /gene="Gmds"
                     /note="GDP-mannose 4, 6-dehydratase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 2 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 41 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:291095"
                     /db_xref="RGD:1311008"
     CDS             218..1138
                     /gene="Gmds"
                     /codon_start=1
                     /product="GDP-mannose 4,6 dehydratase isoform X1"
                     /protein_id="XP_038951422.1"
                     /db_xref="GeneID:291095"
                     /db_xref="RGD:1311008"
                     /translation="MAHAPASCRRYPGSGDGEMGKLRKVALITGITGQDGSYLAEFLL
                     EKGYEISFDLAEYTADVDGVGTLRLLDAIKTCGLINSVKFYQASTSELYGKVQEIPQK
                     ETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRS
                     VAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREF
                     VEKSFMHIGKTIVWEGKNENEVGRCKETGKIHVTVDLKYYRPTEVDFLQGDCSKAQQK
                     LNWKPRVAFDELVREMVQADVELMRTNPNA"
ORIGIN      
        1 cggcgccagc caggccgcag cccggctcgc gccgcccgcc ccggctaaac tgtcccgccc
       61 ctcgctccac gcccggcctc ccgcgcgcct tgtcagaccg tggtggccac tgcagctcct
      121 tgaagcgact ggcgcacgca ccctcgtccc tgcccccccc cgcggcttgt tccactccgc
      181 cttcctatcg gtcgcacgct cacccgcctg aagcgacatg gcccacgctc ccgctagctg
      241 ccggagatac ccgggctccg gggatggcga gatgggcaag ctcaggaagg tagctctcat
      301 caccggcatc actggccagg atggttcata cttggcagaa ttcctgctgg agaaaggata
      361 cgagatctcc tttgacttag ctgaatacac cgcagacgtt gatggagttg gcaccttgcg
      421 gcttctggat gcaattaaaa cttgcggcct tataaattct gtgaagttct accaggcctc
      481 gacaagtgaa ctttatggaa aagttcagga aataccccag aaagagacca cacctttcta
      541 tccgaggtca ccctatggag ccgccaagct ctatgcctat tggattgtgg tgaatttccg
      601 tgaagcttat aatctctttg cagtgaatgg cattctcttc aatcacgaga gccccagaag
      661 aggagctaat tttgttactc gaaaaattag ccggtcagta gctaagattt accttggaca
      721 actggaatgt ttcagtttgg gaaatctgga tgccaaacga gactggggcc atgccaagga
      781 ctatgtagag gctatgtggc tgatgttgca aaatgatgag ccggaggact ttgtcatagc
      841 tactggggaa gttcacagtg tccgtgaatt tgttgaaaaa tcattcatgc acattggaaa
      901 aaccattgtg tgggaaggaa agaatgaaaa tgaagtaggc agatgtaagg agaccggcaa
      961 aattcacgtg actgtggatc tgaaatacta ccgaccgact gaagtggact ttctacaggg
     1021 agactgctcc aaggctcagc agaaactgaa ctggaaaccc cgcgttgcct tcgatgagct
     1081 ggtgagagag atggtgcagg ccgacgtgga gctcatgagg accaacccca acgcttgagc
     1141 ccctctgcag aaactagagg catggcaaca gtgcagagcc agtgaaccgg agttcagtca
     1201 ctcctgccaa tcatggaccc tcgacctcct gtgttgtccc tgcatctaga gctgggccac
     1261 agaggtttgt agaccccaag acaggacacg ccagacctaa ggccgcattg cttttgtcaa
     1321 agcctcctct gaatggtttt gggaaatcaa gaagttttaa tcacatattc attttacttg
     1381 aaattatgtc actagacaac ttatattttg gagtcttgag attgtttttc tcttttctta
     1441 ttaaataatc tttctataaa ctagcaataa caga
//
