LOCUS       NM_001007800            3489 bp    mRNA    linear   ROD 18-FEB-2024
DEFINITION  Rattus norvegicus glyoxylate reductase 1 homolog (Glyr1), mRNA.
ACCESSION   NM_001007800 XM_340752
VERSION     NM_001007800.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3489)
  AUTHORS   Fei,J., Ishii,H., Hoeksema,M.A., Meitinger,F., Kassavetis,G.A.,
            Glass,C.K., Ren,B. and Kadonaga,J.T.
  TITLE     NDF, a nucleosome-destabilizing factor that facilitates
            transcription through nucleosomes
  JOURNAL   Genes Dev 32 (9-10), 682-694 (2018)
   PUBMED   29759984
REFERENCE   2  (bases 1 to 3489)
  AUTHORS   Fang,R., Chen,F., Dong,Z., Hu,D., Barbera,A.J., Clark,E.A.,
            Fang,J., Yang,Y., Mei,P., Rutenberg,M., Li,Z., Zhang,Y., Xu,Y.,
            Yang,H., Wang,P., Simon,M.D., Zhou,Q., Li,J., Marynick,M.P., Li,X.,
            Lu,H., Kaiser,U.B., Kingston,R.E., Xu,Y. and Shi,Y.G.
  TITLE     LSD2/KDM1B and its cofactor NPAC/GLYR1 endow a structural and
            molecular model for regulation of H3K4 demethylation
  JOURNAL   Mol Cell 49 (3), 558-570 (2013)
   PUBMED   23260659
REFERENCE   3  (bases 1 to 3489)
  AUTHORS   Vermeulen,M., Eberl,H.C., Matarese,F., Marks,H., Denissov,S.,
            Butter,F., Lee,K.K., Olsen,J.V., Hyman,A.A., Stunnenberg,H.G. and
            Mann,M.
  TITLE     Quantitative interaction proteomics and genome-wide profiling of
            epigenetic histone marks and their readers
  JOURNAL   Cell 142 (6), 967-980 (2010)
   PUBMED   20850016
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000217.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001007800.3.
            
            On Oct 29, 2022 this sequence version replaced NM_001007800.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085931.1, SRR8487231.11513.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                JACYVU010000217.1  10223948-10224002
            56-92               JACYVU010000217.1  10224981-10225017
            93-172              JACYVU010000217.1  10225945-10226024
            173-311             JACYVU010000217.1  10236878-10237016
            312-551             JACYVU010000217.1  10237447-10237686
            552-638             JACYVU010000217.1  10242203-10242289
            639-695             JACYVU010000217.1  10243630-10243686
            696-746             JACYVU010000217.1  10244286-10244336
            747-820             JACYVU010000217.1  10244428-10244501
            821-920             JACYVU010000217.1  10247243-10247342
            921-1031            JACYVU010000217.1  10250861-10250971
            1032-1133           JACYVU010000217.1  10251852-10251953
            1134-1296           JACYVU010000217.1  10252632-10252794
            1297-1476           JACYVU010000217.1  10253063-10253242
            1477-1601           JACYVU010000217.1  10253573-10253697
            1602-3489           JACYVU010000217.1  10257532-10259419
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..3489
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /note="glyoxylate reductase 1 homolog"
                     /db_xref="GeneID:360477"
                     /db_xref="RGD:1309459"
     exon            1..55
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..1676
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /note="putative oxidoreductase GLYR1; nuclear protein
                     NP60"
                     /codon_start=1
                     /product="cytokine-like nuclear factor N-PAC"
                     /protein_id="NP_001007801.1"
                     /db_xref="GeneID:360477"
                     /db_xref="RGD:1309459"
                     /translation="MAAVSLRLGDLVWGKLGRYPPWPGKIVNPPKDLKKPRGKKCFFV
                     KFFGTEDHAWIKVEQLKPYHAHKEEMIKINKGKRFQQAVDAVEEFLRRAKGKDQTSSH
                     TSADDKNRRNSSEERSRPNSGDEKRKLSLSEGKVKKNMGEGKKRVTSGSADRGSKCLK
                     RAQEQSPRKRGRPPKDEKDLTIPESSTVKGMMAGPMAAFKWQPTASEPVKDADPHFHH
                     FLLSQTEKPAVCYQAITKKLKICEEETGSTSIQAADSTAVNGSITPTDKKIGFLGLGL
                     MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPK
                     AAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQL
                     SNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATI
                     AEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRL
                     AIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH"
     exon            56..92
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            93..172
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            173..311
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            312..551
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            552..638
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            639..695
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            696..746
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            747..820
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            821..920
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1031
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1133
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1296
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            1297..1476
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1601
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
     exon            1602..3489
                     /gene="Glyr1"
                     /gene_synonym="3930401k13rik; N-pac; NPAC; RGD1309459"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtggttggg tggtaagatg gcggctgtga gtctgcggct cggcgacttg gtgtggggga
       61 aactgggccg gtatcctccc tggccgggaa agattgttaa tccacccaag gacttaaaga
      121 aaccacgtgg aaagaaatgc ttcttcgtga agttttttgg aacagaagat cacgcatgga
      181 tcaaagtgga gcagctgaag ccttaccatg ctcacaagga ggagatgatc aagatcaaca
      241 agggcaagcg gttccagcaa gctgtggatg ctgtcgagga gttcctcagg agagccaagg
      301 gcaaagacca gacatcatct cacacttctg ctgatgacaa gaatcggcgt aattccagtg
      361 aggagagaag taggccaaac tcaggtgatg agaaacgcaa gcttagcctg tctgaaggga
      421 aggtgaagaa gaacatggga gaaggaaaga agagggtgac ttcaggctct gcagacagag
      481 gctccaaatg ccttaaaaga gcccaagagc aaagtccccg gaagcggggt cggcccccaa
      541 aggatgagaa ggacctcacc atccctgagt ctagcactgt aaagggaatg atggctggac
      601 caatggctgc atttaaatgg cagccaactg cgagcgagcc agtcaaagat gcagatcctc
      661 atttccatca ttttctgttg agccaaacgg agaagccagc tgtctgttac caggcaatca
      721 caaagaagtt gaaaatatgt gaagaggaga ctggctccac ctccatccag gcagcagaca
      781 gcacagctgt gaatggcagc attaccccca cagacaaaaa gataggattt ttgggccttg
      841 gcttaatggg aagtggcatc gtctccaact tgctaaaaat gggtcacaca gtgactgtct
      901 ggaaccggac tgcagagaaa tgtgatttgt tcatccagga gggggcccgt ctaggaagaa
      961 cccccgctga agttgtttcc acttgtgaca tcacttttgc ctgtgtgtcg gatccaaagg
     1021 cagccaagga cctggtgctg ggccccagcg gtgtgctgca aggaatccgc cccgggaagt
     1081 gctatgtgga catgtcaacg gtggatgccg atacagtcac cgagctggcc caggtgattg
     1141 tatccagagg ggggcgcttt ctggaagccc cagtctcagg gaatcagcaa ctgtccaatg
     1201 atgggatgtt ggtgatctta gcggccggag acaggggctt gtatgaggac tgcagcagct
     1261 gcttccaggc aatggggaag acgtccttct ttttaggtga agttggcaat gcagccaaga
     1321 tgatgctgat tgtgaacatg gtccaaggga gcttcatggc caccattgct gaggggctga
     1381 cgctggccca agtgacaggc cagtcacagc agacactctt ggacatcctc aatcagggac
     1441 aattggccag catctttctg gaccagaagt gccaaaatat cctacaagga aactttaaac
     1501 ctgacttcta cctgaaatac attcagaagg atctccgcct ggccattgcc ctgggtgatg
     1561 cagtcaacca ccccactccc atggcagctg cagccaatga ggtatacaaa agagccaagg
     1621 cactggacca gtctgacaat gacatgtctg ccgtgtaccg agcctacata cactaagcct
     1681 tgcctgccca tctaccctcc catcttccct ctgacctccc ttcccagtgt ggggtcaggg
     1741 ttctgggact tagctctgga ccagtcacct gtctccattt ccttttatac agactttgag
     1801 acttgcatca gcacagtaca cagcagcact cttcctccct ccctgaggtt ctggccaggg
     1861 atgagaggat ctatctccac aggtggcttg tgaagaagct cttgagctgg gcactgattg
     1921 gccctggaac aggaggctgt gtattctctc tctgtttctc ttgtggtctc tgtctctgtc
     1981 acacacacac acagacacac acacacacac acactgtggt ctctgtctct gtcacacaga
     2041 cacacagaca cacacagaca cacacacaca cacacacaca cacacacaca cacacacaca
     2101 cacacacaca cccacccacc cacccaccca cccaggatag aagctgccta gaaactgctg
     2161 cctggctgtt cttgcaagct tgttttatct cggccccctt ctagtcaaga gactagaggg
     2221 actagaattg gcagggagca caggaagcct tctctcaagt ttcccaggac agaccagcag
     2281 agggcccctg gcccccattg gacccctgaa aggagaggcc cctcagccat catgaaccag
     2341 cagattccct gaggaggctc tgtggacctc cagctgagga cgatttcttg tagacactac
     2401 cattatgcag cagctcccag aatgtctctg aactgaagaa agaccggcat gaccacatag
     2461 acaccttcag ggggagcaga gtccacaggc ttcagctccc tggctgtttg ttgtctctgt
     2521 gaccggagcc tgttccgcag gaggttttat ttggatttgc attccagccc atgggaaggg
     2581 gtcttaagca gtggagtgtg ggggtagctc cttcctgttt ccgttatggc agtctcttga
     2641 gctgggctac ctgttaagcc tgctctacac aggtcccctg catgcccctc ctcccctttt
     2701 ccttccatgg agataatatt tctgtcccat ccgattttga tgaggaacct cacttctgcc
     2761 agtatcagtg gttccaagtc ctgggtttgt tgggacagtc ttgaactggg gccttgttct
     2821 aacctaacta ctactcagag gtggatccag tgctctgcca ggccctagcg tttctccttg
     2881 aagaggggac cagagaggct tagaatgtca catgagagga atcacctgag gaagccttcc
     2941 tcctcatgag tttggatttc caaagccacg attcgacttc tccacctggg atgaggatct
     3001 caggacatgg gcctggagca gggaatgctt gtgggattca gcacaattgc tcagtcactg
     3061 ggatgctgaa cagcttctgt ctggacacgg cctagcttgg tcctgggggt tgggggtggg
     3121 gaagatgctg taaggaaacc ggttagtcaa tgttgtctta atattgttga caattctgta
     3181 aagttccttt ttatgactat ttctgtttaa gctatttcac ctttcatttt gaaatccttt
     3241 ccttttatgg agaaaatgtg acattgtgaa aatgcttgta agaaagcccc tactccctct
     3301 tttcctttaa atgacaaatc taggtgatta aggttgtgaa tttttatttt cactttgttt
     3361 ttaatgaaca tttgtctttc agaataggat tgtgtgataa tgtttaaatg gcaaaaacaa
     3421 aacatgattt tgtgcaatta acaaagctac tgcaagaaaa aaataaataa aacatttctt
     3481 ggtaccata
//
