LOCUS       NM_012794                584 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycosylation dependent cell adhesion molecule 1
            (Glycam1), mRNA.
ACCESSION   NM_012794
VERSION     NM_012794.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Dowbenko,D., Watson,S.R. and Lasky,L.A.
  TITLE     Cloning of a rat homologue of mouse GlyCAM 1 reveals conservation
            of structural domains
  JOURNAL   J Biol Chem 268 (19), 14399-14403 (1993)
   PUBMED   8100229
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 26, 2020 this sequence version replaced NM_012794.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L08100.1, BM390037.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760433, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000007.1  136561215-136561299 c
            86-130              JAXUCZ010000007.1  136560437-136560481 c
            131-334             JAXUCZ010000007.1  136559527-136559730 c
            335-584             JAXUCZ010000007.1  136559039-136559288 c
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..584
                     /gene="Glycam1"
                     /note="glycosylation dependent cell adhesion molecule 1"
                     /db_xref="GeneID:25258"
                     /db_xref="RGD:2712"
     exon            1..85
                     /gene="Glycam1"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..462
                     /gene="Glycam1"
                     /note="SGP50; glyCAM-1; sulfated 50 kDa glycoprotein;
                     endothelial ligand FOR L-selectin"
                     /codon_start=1
                     /product="glycosylation-dependent cell adhesion molecule 1
                     precursor"
                     /protein_id="NP_036926.2"
                     /db_xref="GeneID:25258"
                     /db_xref="RGD:2712"
                     /translation="MKFFTVLLFASLAATSLAAVPGSKDELHLRTQPTDAIPASQFTP
                     SSHISKESTSSKDLSKESSIFNEELVSEDNVGTESTKPQSQEAQDGLRSGSSQQEETT
                     SAATSEGKLTMLSQAVQKELGKVIEGFISGVEDIISGASGTVRP"
     exon            86..130
                     /gene="Glycam1"
                     /inference="alignment:Splign:2.1.0"
     exon            131..334
                     /gene="Glycam1"
                     /inference="alignment:Splign:2.1.0"
     exon            335..584
                     /gene="Glycam1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgacctgtt ccagtgccac catgaaattc ttcactgtcc tgctatttgc cagccttgct
       61 gccacctctc ttgctgccgt gcctgggtcc aaagatgaac tccacctgag gactcagccc
      121 acagatgcca ttccagcttc ccagttcact ccttccagcc acatcagcaa ggagagcact
      181 tccagtaagg acctttccaa ggagtcttcc atcttcaacg aagagctggt gtccgaagat
      241 aatgtgggga cagaatctac caaaccacag agtcaagagg cccaggacgg gctcaggagt
      301 gggtcatctc agcaggaaga gaccacctca gctgcaacct cagagggaaa actgaccatg
      361 ctgagccagg cagtgcagaa agaactgggt aaagtaattg aaggatttat aagtggtgtg
      421 gaagacataa tctctggtgc cagtggtacc gtgaggccct gaagacaaaa acgcctaacc
      481 gctaagtccc acgctaggtg gcgccttcat cacccacatt ctgctcatct gaccaccacc
      541 tcttggtctg ccctttgatg tcttacatta aagtactgca accg
//
