LOCUS       NM_001106559            1130 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus glycosyltransferase 6 domain containing 1
            (Glt6d1), mRNA.
ACCESSION   NM_001106559 XM_001078072 XM_231076
VERSION     NM_001106559.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Turcot-Dubois,A.L., Le Moullac-Vaidye,B., Despiau,S., Roubinet,F.,
            Bovin,N., Le Pendu,J. and Blancher,A.
  TITLE     Long-term evolution of the CAZY glycosyltransferase 6 (ABO) gene
            family from fishes to mammals--a birth-and-death evolution model
  JOURNAL   Glycobiology 17 (5), 516-528 (2007)
   PUBMED   17298992
  REMARK    Erratum:[Glycobiology. 2007 Aug;17(8):14G]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Sep 16, 2008 this sequence version replaced NM_001106559.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.15429.1,
                                           SRR26360181.1482251.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                JAXUCZ010000003.1  29034364-29034449   c
            87-134              JAXUCZ010000003.1  29030917-29030964   c
            135-272             JAXUCZ010000003.1  29027276-29027413   c
            273-1130            JAXUCZ010000003.1  29026025-29026882   c
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..1130
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /note="glycosyltransferase 6 domain containing 1"
                     /db_xref="GeneID:296577"
                     /db_xref="RGD:1311348"
     exon            1..86
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     CDS             7..942
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /EC_number="2.4.1.-"
                     /note="galactosyltransferase family 6 domain containing 1"
                     /codon_start=1
                     /product="glycosyltransferase 6 domain-containing protein
                     1"
                     /protein_id="NP_001100029.2"
                     /db_xref="GeneID:296577"
                     /db_xref="RGD:1311348"
                     /translation="MKAKGRILLLTSCLFLLLLLLAKIHLRNHQEEELPLSDWFDPRR
                     RLDVITTTDWLAPVIWEGTFDRKVLEKYYHKQNITMGLTVFAVSSFNGQYLDPFLQSA
                     SKFFMPGYRVIFYIMVDKSLKLPEMGHNPLQSFQVLVVSQERQWSDFDLMRMTVLSKH
                     IREHIRFEVDFLFVMSVNMVFQNVFGVETLSTSVAQLHAWWYFRKTTHLPYERRPTSA
                     AYIPFGLGDFYYAGAIIGGVPFQVLDFTHQYLKSVILDIENGVNSTYEKYLNKYFFLN
                     KPTKLLSPEYSWDQTFNIPQQVHYVKVAHYPTDDL"
     exon            87..134
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     exon            135..272
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /inference="alignment:Splign:2.1.0"
     exon            273..1130
                     /gene="Glt6d1"
                     /gene_synonym="Gltdc1; GT6m7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaggaatga aggccaaagg gaggatttta ttgctaactt cctgcctttt tctgctgctg
       61 ctgctgctgg ctaagatcca cttgaggaac caccaggaag aggaacttcc gctctcagac
      121 tggtttgacc ccaggagacg cttggatgtt atcacgacca cagactggct ggcccctgtc
      181 atatgggaag gcacctttga cagaaaggtc ctggagaaat attaccataa gcagaacatc
      241 accatgggct tgactgtgtt tgctgtcagc agtttcaatg gccagtacct ggacccattc
      301 ttgcaatcgg ccagcaagtt cttcatgcct ggctatcggg tgatcttcta catcatggtg
      361 gataagtccc tgaagttacc tgaaatgggg cacaaccctc tacagtcctt ccaagtactc
      421 gtagtaagcc aggagaggca gtggagcgac tttgacctca tgcgcatgac agtcttgtcc
      481 aagcacatcc gggagcacat caggtttgaa gtggacttcc tcttcgtcat gagtgtcaac
      541 atggtcttcc agaatgtgtt tggggtggag actctgagca cgtctgtggc tcagctccat
      601 gcttggtggt atttccgaaa gacgacgcat ctcccctatg agaggagacc tacatcagcg
      661 gcctacatcc cctttggcct gggggacttc tattatgctg gtgccattat aggtggagtg
      721 ccctttcagg tcttggactt cactcatcaa tacttgaaaa gtgttatttt ggatatagaa
      781 aatggagtta acagtaccta tgaaaagtac ctcaacaaat attttttcct caacaaaccc
      841 accaagctcc tatccccaga atatagttgg gaccaaacct tcaacatccc tcagcaagtg
      901 cattatgtca aggttgctca ttaccccaca gacgacttat gatgcagcag tgttgatgac
      961 ctcagagcca accacaggag tgcctcagag acacagactc atgttaaaca cccacatttc
     1021 agagacccaa taatctatat tatttccaaa atcaattgct ctttcttgta atttcaaatt
     1081 gtccaacttg actgaatcga ggacgaataa aatgtggcac ttcatgttca
//
