LOCUS       NM_001191914            1405 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus glycine receptor alpha 4 (Glra4), mRNA.
ACCESSION   NM_001191914 XM_346350
VERSION     NM_001191914.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1405)
  AUTHORS   Heinze,L., Harvey,R.J., Haverkamp,S. and Wassle,H.
  TITLE     Diversity of glycine receptors in the mouse retina: localization of
            the alpha4 subunit
  JOURNAL   J Comp Neurol 500 (4), 693-707 (2007)
   PUBMED   17154252
REFERENCE   2  (bases 1 to 1405)
  AUTHORS   Harvey,R.J., Schmieden,V., Von Holst,A., Laube,B., Rohrer,H. and
            Betz,H.
  TITLE     Glycine receptors containing the alpha4 subunit in the embryonic
            sympathetic nervous system, spinal cord and male genital ridge
  JOURNAL   Eur J Neurosci 12 (3), 994-1001 (2000)
   PUBMED   10762330
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jul 17, 2010 this sequence version replaced XM_346350.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.103096.1,
                                           SRR26360194.1060831.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111, SAMN14984024
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000021.1  104923249-104923328 c
            81-211              JAXUCZ010000021.1  104919543-104919673 c
            212-279             JAXUCZ010000021.1  104919193-104919260 c
            280-503             JAXUCZ010000021.1  104918264-104918487 c
            504-586             JAXUCZ010000021.1  104918041-104918123 c
            587-727             JAXUCZ010000021.1  104916440-104916580 c
            728-942             JAXUCZ010000021.1  104912518-104912732 c
            943-1092            JAXUCZ010000021.1  104908019-104908168 c
            1093-1405           JAXUCZ010000021.1  104902805-104903117 c
FEATURES             Location/Qualifiers
     source          1..1405
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..1405
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /note="glycine receptor alpha 4"
                     /db_xref="GeneID:367912"
                     /db_xref="RGD:1564103"
     exon            1..80
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..1383
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /note="glycine receptor, alpha 4 subunit; glycine receptor
                     subunit alpha-4"
                     /codon_start=1
                     /product="glycine receptor subunit alpha-4 precursor"
                     /protein_id="NP_001178843.1"
                     /db_xref="GeneID:367912"
                     /db_xref="RGD:1564103"
                     /translation="MTTLVPASLFLLLWTLPGKVLLSVALAKEDVKSGPKGSQPMSPS
                     DFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWN
                     DPRLAYREYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVL
                     YSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAPAVQVAEGLTL
                     PQFILRDEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSF
                     WINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLE
                     YAAVNFVSRQHKEFMRLRRKQRRRHMEEDIIREGRFYFRGYGLGHCLQARDGGPMEGS
                     SIYSPQPPTTLLKEGETMRKVYVDRAKRIDTISRAVFPFTFLVFNIFYWVVYKVLRSE
                     DIHQAL"
     exon            81..211
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            212..279
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            280..503
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            504..586
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            587..727
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            728..942
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1092
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1405
                     /gene="Glra4"
                     /gene_synonym="RGD1564103"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtccctgca gaatgacaac tcttgttcca gcaagcctct tccttcttct ctggaccttg
       61 ccagggaagg tcctcctcag tgtggctttg gcaaaagagg atgtcaaatc tgggcccaaa
      121 ggatcccagc ccatgtcccc ctctgatttc ttggacaagc ttatgggacg aacatctgga
      181 tatgatgcta ggattaggcc caatttcaaa ggtccacctg tgaatgtgac ctgcaacatc
      241 ttcatcaaca gttttggctc cgtcactgag accaccatgg actaccgggt aaatgtcttc
      301 ttgcggcagc agtggaatga cccacgtctg gcctaccgag aatatccaga tgactctctg
      361 gatctagacc catccatgct cgattctatt tggaagccag acctcttctt tgccaatgag
      421 aaaggggcca acttccatga ggtgaccaca gacaacaagt tactgcgcat cttcaagaat
      481 gggaatgttc tctacagcat cagattgacc ctcattttgt cctgcccaat ggacctcaag
      541 aacttcccaa tggacatcca gacctgcacg atgcagctgg aaagttttgg ctacaccatg
      601 aatgacctca tgtttgagtg gctagaagat gctcctgctg tccaagtggc tgaggggttg
      661 actctacccc aatttatctt gcgggatgag aaggatctag gttactgtac caagcattac
      721 aacacaggaa aattcacttg cattgaggta aagtttcacc tggagcggca gatgggctac
      781 tatctgattc aaatgtacat ccccagtcta ctcattgtca tcctgtcctg ggtctccttc
      841 tggatcaaca tggatgccgc ccctgctcgt gtaggccttg gtatcaccac tgtcctcacc
      901 atgacaactc agagctctgg atccagggcc tctttgccta aggtgtccta tgtgaaggca
      961 attgacatct ggatggctgt atgcctgctg tttgtatttg ctgctttgct tgagtatgct
     1021 gcagtcaatt ttgtctctcg tcagcataag gaatttatga gacttcgtag aaagcagaga
     1081 cgtcgacaca tggaagaaga catcataaga gagggccgct tctattttcg tggctatggc
     1141 ctaggacact gcctacaagc aagggatgga ggtccaatgg aaggctccag catttacagt
     1201 ccccaacctc caaccactct tctaaaggag ggagaaacca tgaggaaagt ctatgtggac
     1261 cgagccaaga gaattgacac catctccaga gctgtcttcc cttttacttt tcttgtcttc
     1321 aatatcttct attgggttgt gtataaagtg ctaaggtcag aagatatcca ccaggcactg
     1381 tgaacagggt ggaggctata gtgta
//
