LOCUS       XM_006238561            2876 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus GLIS family zinc finger 1 (Glis1),
            transcript variant X1, mRNA.
ACCESSION   XM_006238561
VERSION     XM_006238561.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238561.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006238561.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2876
                     /gene="Glis1"
                     /note="GLIS family zinc finger 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 7 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:298732"
                     /db_xref="RGD:1308030"
     CDS             178..2559
                     /gene="Glis1"
                     /codon_start=1
                     /product="zinc finger protein GLIS1 isoform X1"
                     /protein_id="XP_006238623.1"
                     /db_xref="GeneID:298732"
                     /db_xref="RGD:1308030"
                     /translation="MHCEVAEALSDKRPKEAPGAPGPGRGPAGLEAHMAFRIAVSGGG
                     CGDGNPRDLLPRLPVPPPRAHDLLRPRSPRDYSVSKAGGGKVNGSYGHSSEKSLLDLD
                     LAEGPSPSCHQGLFLPAGTPPPRGHPPVCERLLHFPHPNRSPRPQATYANGSLPAAQH
                     IKQEALPDYQAMVSAHTPLPTHCRAPLSMGLHSDLDFPGRGLTNPAPSCYLVGNEPIS
                     SLGPQPEAHLPEGSLKRCCLLGLPPTSSASSSPCASSDINPVIHSSQTALVSCVNGLR
                     SPPLPGDLGGPPKRSRHGPGPGPVSSDGQEGSLQLEACRKSGFLKQEPMDEFSELFAP
                     HQQGLPPPYPLPQLPTGPSLGGLGLGLAGRMAAGRQACRWVDCCAAYEQQEELVRHIE
                     KSHIDQRKGEDFTCFWAGCVRRYKPFNARYKLLIHMRVHSGEKPNKCMFEGCSKAFSR
                     LENLKIHLRSHTGEKPYLCQHPGCQKAFSNSSDRAKHQRTHLDTKPYACQIPGCSKRY
                     TDPSSLRKHVKAHSAKEQQVRKKLHTGADPEAAVLSECLALQQLQASTPLPASRGKGS
                     QTLSQELLPGVYPGSVTPQNGLASGILSPSHDVPSRHHPLEVTTGSHHHLSPLPTAES
                     TRDGLGPGLLSPMVSPLKGLGPPPLPPASQSQSPGAQSFSTIPSKPTYPPFQSPPPPL
                     PSPQGYQGSFHSIQNCFPYADCYRTTEPAASRDGLVGDAHGFNPLRPSTYSSLSTPLS
                     APGYEALAETPCPTLQPQPSEDLVSSGPEDCGFFPNGAFDHCLSHIPSIYTDT"
ORIGIN      
        1 cggccgcccc gcccccgggg tgtcgccccg taggacgccg cggccgtggc ggtggcggcg
       61 gcggctgcgg gggctgcggc gccagaggag gcgcgccgtg ctgtgcgccc cgcgagccgc
      121 tgcgcccgcg gcgaggagcc tggcgcgacc cccagccgtg cgccccgccc cggcgccatg
      181 cattgcgagg tggccgaggc actttcggac aagaggccaa aggaggcccc tggtgctccc
      241 ggccccggcc gcgggcctgc tggcctggaa gcgcacatgg ccttcaggat tgccgtgagt
      301 ggcggcggct gcggggatgg gaacccacga gacctgctgc cacgactgcc ggtgccacca
      361 ccacgggccc acgatctcct ccggccccgg agccctcgag actacagcgt gtccaaggcc
      421 ggcggcggca aggtgaacgg gagttatggg cacagctcag agaagagcct gctggacctg
      481 gacctggccg agggtcccag cccctcctgc caccagggtc tgtttcttcc tgcagggacc
      541 ccgccacccc ggggtcaccc ccctgtctgt gagagactgc ttcatttccc ccaccctaac
      601 aggtcaccca ggcctcaggc tacgtatgcg aatggcagcc tcccagcagc tcagcacatc
      661 aagcaagaag ccctacccga ctaccaggcc atggtcagcg cccacacacc cctgcccacc
      721 cactgccgag ccccattgtc catgggtctg cactcagacc tggacttccc aggccgaggc
      781 ctcaccaacc ccgcaccttc ctgctacctt gtgggcaatg aacccatctc aagcctgggt
      841 ccccaacccg aggcccacct ccctgagggc agcctgaaac gctgctgcct cctgggccta
      901 ccccccacct cttcagcctc ctcctcaccc tgtgcctcct cagatatcaa tcctgtcatc
      961 cactcctccc agacagctct ggttagctgt gtaaacggac tccgaagccc acctctgccg
     1021 ggagacctgg ggggtcctcc caagcgatca cggcatgggc ctgggcctgg gcctgtatcc
     1081 agtgacggcc aggagggcag cttgcagctt gaagcatgcc ggaagtcagg cttcctgaag
     1141 caggagccca tggacgagtt ttcagagctc tttgctcctc atcagcaggg tttgccacct
     1201 ccctacccct tgcctcagtt gcctactggc cccagccttg gaggcctagg gctaggcctg
     1261 gcgggcagga tggcggccgg tcggcaggca tgccgctggg tggactgctg tgcagcctat
     1321 gagcagcagg aggagctggt gcggcacatc gagaagagcc acatcgacca gcgcaagggc
     1381 gaagacttca cctgcttctg ggccggttgt gtgcggcgtt acaagccctt caatgcccgc
     1441 tacaagctgc tcatccacat gagggtacac tcgggcgaga agcccaacaa gtgcatgttc
     1501 gaaggctgca gtaaagcctt ttcccgtctg gagaacctga agatccacct gaggagccac
     1561 acaggcgaga aaccatacct gtgccagcac ccaggctgcc agaaggcctt cagcaactcc
     1621 agtgaccgtg ccaagcacca acgcacccac ctcgacacga agccatatgc ttgtcagatc
     1681 cctggctgct ccaagcgcta cacggacccc agctccctcc gcaagcacgt gaaggcccac
     1741 tcagccaaag agcaacaggt gcgtaagaag ctgcacacag gtgccgatcc agaggctgcc
     1801 gttctgtcag agtgtctggc actgcagcag ctccaagcat ccacaccttt gccagccagc
     1861 agagggaagg gcagccaaac cctgagccag gagctactcc caggtgtgta tcctggctcc
     1921 gtcaccccac aaaatggact tgcttcaggc atcctgtccc cttcccatga cgtcccttcc
     1981 aggcaccacc ccctggaggt caccactggt tcccaccacc acctgtcccc tctgcccaca
     2041 gctgagagca ccagggatgg cctggggcct ggtctccttt cacccatggt cagcccactg
     2101 aaggggcttg gtcccccacc attgccacca gcctcccaga gtcagtctcc aggggcacag
     2161 tcattctcca cgatccccag caagcctacc tacccaccct tccagagccc accaccacct
     2221 ctgcccagcc cccaaggcta ccaaggcagt ttccattcca tccagaactg cttcccctat
     2281 gctgactgtt accggaccac tgagccagca gcctccaggg atggactggt gggtgatgcc
     2341 catggtttca accccttgcg acccagcacc tactccagcc tcagcacacc tttatctgcc
     2401 ccaggctatg aggccctggc agaaactcca tgtcccacct tgcaaccaca gccatctgaa
     2461 gacctggtgt ccagtggtcc cgaggactgt ggcttcttcc ccaatggggc ctttgaccac
     2521 tgcctgagtc acatcccctc catctacaca gacacctgaa ggagccccac tctacctgcc
     2581 tgcccagctc ctgatactac tttgcctact tgccatcagc cctggtgctt ccttacaagg
     2641 ggcagagagg ccacaccaca ggggcacttc cctacctgga gggctgtctt gtcttggagc
     2701 tgcctgcccg gaactgtggt cctctgacag tcccttgact gtatcttcct ctctctccct
     2761 aaggttctca aatcacagac ctcgtgtata tacaatgtac aggacctctt tcccgtctcc
     2821 ctgcaagttt tatatttttg gttttacaag aaaaacatta aaaactggaa actaga
//
