LOCUS       NM_001029926            2142 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus GLI family zinc finger 4 (Gli4), mRNA.
ACCESSION   NM_001029926 XM_576294
VERSION     NM_001029926.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2142)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2142)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097383.1.
            
            On Jul 29, 2005 this sequence version replaced XM_576294.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097383.1, CV121036.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132275, SAMD00132278
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2142
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..2142
                     /gene="Gli4"
                     /note="GLI family zinc finger 4"
                     /db_xref="GeneID:500893"
                     /db_xref="RGD:1560906"
     exon            1..482
                     /gene="Gli4"
                     /inference="alignment:Splign:2.1.0"
     exon            483..635
                     /gene="Gli4"
                     /inference="alignment:Splign:2.1.0"
     CDS             518..1630
                     /gene="Gli4"
                     /note="zinc finger protein GLI4-like"
                     /codon_start=1
                     /product="zinc finger protein GLI4"
                     /protein_id="NP_001025097.1"
                     /db_xref="GeneID:500893"
                     /db_xref="RGD:1560906"
                     /translation="MAALEGVEEAPPVLSLNSLSSPGTPGDQHHVALHGHPHHGSPCS
                     SPEVPSQTADPDLRVVEEVESTRDTWLDSECKPEKTQASLNSQSLGDGLASRGRALRG
                     MSKCADSIDQECSLEQPAGLPPGTKPCSQKRDTWHMVLLPQGAPGTEGSAKKTAEVGS
                     SLSRDCRQPGPQGTKAHRCEVCGKSFKYKSLLLKHQRIHTGEKPYACHECGKHFGSWW
                     GFMQHHRIHTGEKPYECGHCGQAFSHSSHFTQHLRIHNGEKPYKCGECGHAFSQSSNL
                     VRHQRLHTGEKPYVCSQCGKAFIWSSVLIEHQRIHTGEKPYKCEDCGKAFRGRSHFFR
                     HLRTHTGEKPFSCGSCGKAFGQSSQLIQHQRVHYHE"
     exon            636..731
                     /gene="Gli4"
                     /inference="alignment:Splign:2.1.0"
     exon            732..2108
                     /gene="Gli4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcatttccgg ccggcgcgcg cgggcggcct cctccctttc gcaaggtgag tggtcgcccc
       61 tcccagtggt tccaatcggg acccttcgtt tcatgcgcgt gggtgcctat ctctttctcc
      121 cgcagtgact tcggtcaccc ccggcccggg tcctctgagt ggtttcaacc taggagaccc
      181 tgtagggcgg ccgtacagtg tccgccccgc gccagccccc agcgtctccg cctcccggcg
      241 ggtgctgctg catctcaccc cgtgtcatcc tctctcccac tcgtcacttt gtggaagaaa
      301 actgggctct ctctttgggc ttcatccgtt tatggcaaac caagttaagg aaaaatgccg
      361 cccccttttt atttttctca agtctcgtgt aattcaggct gacgtcgaat ttgctatgta
      421 agcaatgatg cccttgaatt tattattctg cagccttcac atcccaagtg ttgggattag
      481 aggtcccaag gtgcctcctt gagcaggact caggaagatg gctgcactag agggtgtaga
      541 ggaggcccct cctgtcttat cactcaacag tctctcatca ccagggacac ctggagacca
      601 gcaccatgtg gcactccatg gacaccctca ccacggctct ccctgttcca gccctgaggt
      661 gccttcccag acagcagacc cagacctccg agtcgtagag gaagtggaga gcaccagaga
      721 tacctggctt gactctgagt gcaagcctga gaagactcaa gcctctctca actcccaaag
      781 tcttggagat gggctggcct cacgtggaag ggcactgagg ggcatgtcta agtgtgcgga
      841 cagcattgac caggaatgta gcttggagca gccagcaggc ctgcctccag gaaccaagcc
      901 ctgctctcag aaaagagaca cttggcacat ggtactcttg ccccagggag ccccagggac
      961 agagggtagc gccaagaaga ctgctgaggt gggcagtagt ttgagtcgag actgccggca
     1021 gccgggccca cagggcacca aggcacaccg ctgtgaggtc tgtggtaaga gcttcaagta
     1081 caaatctttg ctgctgaagc accagcgcat ccacacaggg gagaagcctt acgcctgtca
     1141 tgagtgcggc aaacacttcg ggagctggtg gggcttcatg cagcaccacc gcatccacac
     1201 aggcgagaag ccctatgagt gcggccattg cggccaggcc ttcagccaca gctcacactt
     1261 cacacagcac ttgcgcatcc acaacggcga gaagccctac aagtgtggcg aatgtggcca
     1321 tgccttcagc cagagctcca acctggtgcg ccaccagcgg ctgcacaccg gggaaaagcc
     1381 gtatgtctgc agccagtgtg gcaaggcctt catctggagc tctgtgctca tcgaacacca
     1441 gcgcattcac acaggcgaga agccctacaa gtgtgaagac tgcggcaagg ccttccgagg
     1501 acggtcgcat ttcttccggc acttacggac ccacacgggc gagaagccct tctcctgtgg
     1561 ctcctgtggc aaagcgtttg gccagagctc tcagctcatc cagcaccaga gagtgcacta
     1621 ccacgagtag ccacacccca gtgaagtctg ggtaaacctg ctctactgag tgggataggg
     1681 atgcttacag gtacacagca ggacatgccc tgtgtccagg tgtgatggct aaggaaactc
     1741 catttcatgg taggtattca acttggaacc tactcctgac actagccatt tctgactcca
     1801 gttcctggaa gatcccagtg aacctgactc agtaactcct acccaaaaat gtacagccat
     1861 gaccatctac ctgttatgac atgactgcct gcttttttgg cttctgtaac ctgcttttgc
     1921 agacattcaa ggactatttt gaggtcttag taagcagagc agcacagctc ctggcttgct
     1981 ggtgcagaca ctcaatgtgg gttttgccat tacaaaacct accctcaccc ctttgcacag
     2041 cagtctctag tttggctcag agactgttgt cctgctattg gtctcaataa atttataact
     2101 aattataaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
